Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006991 Sechium edule HOM05D002942 ORTHO05D003270 2.2e-44 182.2 109 100.0
Sed0006241 Sechium edule HOM05D002942 ORTHO05D003270 3.8e-33 144.8 93 98.9
ClCG08G013230 Citrullus lanatus HOM05D002942 ORTHO05D003270 3.6e-31 138.3 93 94.6
MELO3C011250.2 Cucumis melo HOM05D002942 ORTHO05D003270 3.6e-31 138.3 93 94.6
CsaV3_2G031960 Cucumis sativus L. HOM05D002942 ORTHO05D003270 3.6e-31 138.3 93 94.6
Cfa013170 Carpinus fangiana HOM05D002942 ORTHO05D003270 7.5e-29 130.6 93 78.5
Haze_21543 Corylus avellana HOM05D002942 ORTHO05D003270 7.5e-29 130.6 93 78.5
CiPaw.07G221500 Carya illinoinensis HOM05D002942 ORTHO05D003270 1.7e-28 129.4 93 78.5
CANSAT25G2215 Cannabis sativa HOM05D002942 ORTHO05D003270 1.1e-27 126.7 93 77.4
CiPaw.08G012600 Carya illinoinensis HOM05D002942 ORTHO05D003270 1.4e-27 126.3 93 78.5
QL02p022301 Quercus lobata HOM05D002942 ORTHO05D003270 7.0e-27 124.0 93 77.4
Atru.chr7.2391 Acer truncatum HOM05D002942 ORTHO05D003270 1.6e-26 122.9 93 75.3
Prupe.1G478400 Prunus persica HOM05D002942 ORTHO05D003270 1.6e-26 122.9 93 75.3
FAN27G1734 Fragaria x ananassa HOM05D002942 ORTHO05D003270 3.5e-26 121.7 93 74.2
FvH4_2g29440 Fragaria vesca HOM05D002942 ORTHO05D003270 7.7e-26 120.6 93 73.1
Ciclev10009720m.g Citrus clementina HOM05D002942 ORTHO05D003270 2.3e-25 119.0 93 76.3
MD08G1147100 Malus domestica HOM05D002942 ORTHO05D003270 6.5e-25 117.5 93 72.0
RcHm_v2.0_Chr6g0298231 Rosa chinensis HOM05D002942 ORTHO05D003270 8.6e-25 117.1 93 73.1
Sc09g0008360 Simmondsia chinensis HOM05D002942 ORTHO05D003270 1.1e-24 116.7 94 73.4
EL10Ac2g02610 Beta vulgaris HOM05D002942 ORTHO05D003270 1.9e-24 115.9 96 71.9
Dinv30163 Davidia involucrata HOM05D002942 ORTHO05D003270 3.3e-24 115.2 94 72.3
FAN24G0610 Fragaria x ananassa HOM05D002942 ORTHO05D003270 4.2e-24 114.8 93 72.0
Ah.12g064060 Amaranthus hybridus HOM05D002942 ORTHO05D003270 5.5e-24 114.4 96 71.9
Rhsim02G0199000 Rhododendron simsii HOM05D002942 ORTHO05D003270 5.5e-24 114.4 94 73.4
Manes.16G120300 Manihot esculenta HOM05D002942 ORTHO05D003270 9.5e-24 113.6 95 72.6
GSVIVG01035829001 Vitis vinifera HOM05D002942 ORTHO05D003270 1.6e-23 112.8 94 72.3
CSS0048476 Camellia sinensis var. sinensis HOM05D002942 ORTHO05D003270 8.0e-23 110.5 93 71.0
Potri.018G029500 Populus trichocarpa HOM05D002942 ORTHO05D003270 8.0e-23 110.5 95 71.6
Potri.006G251800 Populus trichocarpa HOM05D002942 ORTHO05D003270 1.0e-22 110.2 95 71.6
Actinidia14615 Actinidia chinensis HOM05D002942 ORTHO05D003270 1.8e-22 109.4 93 67.7
TWI34G0582 Tripterygium wilfordii HOM05D002942 ORTHO05D003270 2.3e-22 109.0 94 69.1
COL.COLO4_23973 Corchorus olitorius HOM05D002942 ORTHO05D003270 4.0e-22 108.2 94 70.2
Eucgr.C02802 Eucalyptus grandis HOM05D002942 ORTHO05D003270 4.0e-22 108.2 94 69.1
TWI63G1394 Tripterygium wilfordii HOM05D002942 ORTHO05D003270 4.0e-22 108.2 94 68.1
Actinidia22358 Actinidia chinensis HOM05D002942 ORTHO05D003270 5.2e-22 107.8 93 68.8
Cc08_g00930 Coffea canephora HOM05D002942 ORTHO05D003270 5.2e-22 107.8 93 71.0
Cpa.g.sc115.9 Carica papaya HOM05D002942 ORTHO05D003270 8.9e-22 107.1 93 68.8
Lsat_1_v5_gn_5_30441 Lactuca sativa HOM05D002942 ORTHO05D003270 2.0e-21 105.9 93 64.5
Gohir.D08G257100 Gossypium hirsutum HOM05D002942 ORTHO05D003270 2.6e-21 105.5 94 68.1
Sabra06G0196800 Salix brachista HOM05D002942 ORTHO05D003270 2.6e-21 105.5 95 67.4
AUR62024899 Chenopodium quinoa HOM05D002942 ORTHO05D003270 3.4e-21 105.1 96 66.7
Actinidia13247 Actinidia chinensis HOM05D002942 ORTHO05D003270 7.5e-21 104.0 93 67.7
Duzib168G0974 Durio zibethinus HOM05D002942 ORTHO05D003270 1.3e-20 103.2 94 68.1
Aa31LG3G15930 Aethionema arabicum HOM05D002942 ORTHO05D003270 2.2e-20 102.4 94 66.0
Duzib187G1164 Durio zibethinus HOM05D002942 ORTHO05D003270 2.8e-20 102.1 94 68.1
Gorai.004G274100 Gossypium raimondii HOM05D002942 ORTHO05D003270 2.8e-20 102.1 94 67.0
TAR625G0164 Trochodendron aralioides HOM05D002942 ORTHO05D003270 2.8e-20 102.1 93 65.6
Gohir.A08G236500 Gossypium hirsutum HOM05D002942 ORTHO05D003270 3.7e-20 101.7 94 67.0
SalBow1G4423 Salvia bowleyana HOM05D002942 ORTHO05D003270 6.3e-20 100.9 93 64.5
Sabra18G0031500 Salix brachista HOM05D002942 ORTHO05D003270 8.3e-20 100.5 95 66.3
Dinv15964 Davidia involucrata HOM05D002942 ORTHO05D003270 1.1e-19 100.1 93 66.7
Dinv18232 Davidia involucrata HOM05D002942 ORTHO05D003270 1.1e-19 100.1 93 66.7
Sp6g32300 Schrenkiella parvula HOM05D002942 ORTHO05D003270 1.1e-19 100.1 94 62.8
HanXRQChr02g0050461 Helianthus annuus HOM05D002942 ORTHO05D003270 1.4e-19 99.8 94 61.7
Sopen08g016230 Solanum pennellii HOM05D002942 ORTHO05D003270 1.4e-19 99.8 94 68.1
PGSC0003DMG401020784 Solanum tuberosum HOM05D002942 ORTHO05D003270 1.4e-19 99.8 94 68.1
Migut.E01790 Erythranthe guttata HOM05D002942 ORTHO05D003270 1.8e-19 99.4 93 65.6
Thhalv10014851m.g Eutrema salsugineum HOM05D002942 ORTHO05D003270 1.8e-19 99.4 94 62.8
Lsat_1_v5_gn_6_22420 Lactuca sativa HOM05D002942 ORTHO05D003270 1.8e-19 99.4 94 60.6
MSTRG.14090 Avicennia marina HOM05D002942 ORTHO05D003270 2.4e-19 99.0 94 63.8
CAN.G317.1 Capsicum annuum HOM05D002942 ORTHO05D003270 2.4e-19 99.0 94 68.1
Nitab4.5_0009676g0030 Nicotiana tabacum HOM05D002942 ORTHO05D003270 2.4e-19 99.0 94 69.1
CARHR202000 Cardamine hirsuta HOM05D002942 ORTHO05D003270 3.1e-19 98.6 94 62.8
Nitab4.5_0002007g0060 Nicotiana tabacum HOM05D002942 ORTHO05D003270 3.1e-19 98.6 94 68.1
AL6G21890 Arabidopsis lyrata HOM05D002942 ORTHO05D003270 4.1e-19 98.2 94 61.7
AT5G11260 Arabidopsis thaliana HOM05D002942 ORTHO05D003270 5.4e-19 97.8 94 61.7
PGR044G2450 Punica granatum HOM05D002942 ORTHO05D003270 5.4e-19 97.8 95 63.2
MSTRG.25997 Avicennia marina HOM05D002942 ORTHO05D003270 9.2e-19 97.1 93 62.4
Carub.0006s0973 Capsella rubella HOM05D002942 ORTHO05D003270 9.2e-19 97.1 94 61.7
Nn2g11976 Nelumbo nucifera HOM05D002942 ORTHO05D003270 1.6e-18 96.3 94 63.8
Solyc08g061130.3 Solanum lycopersicum HOM05D002942 ORTHO05D003270 2.0e-18 95.9 94 67.0
Nn8g39399 Nelumbo nucifera HOM05D002942 ORTHO05D003270 2.7e-18 95.5 109 60.6
MSTRG.1716 Avicennia marina HOM05D002942 ORTHO05D003270 3.5e-18 95.1 94 63.8
DCAR_003095 Daucus carota HOM05D002942 ORTHO05D003270 3.5e-18 95.1 90 64.4
ECA233G5819 Erigeron canadensis HOM05D002942 ORTHO05D003270 7.8e-18 94.0 97 62.9
FAN20G2840 Fragaria x ananassa HOM05D002942 ORTHO05D003270 1.0e-17 93.6 60 83.3
Thecc.09G150300 Theobroma cacao HOM05D002942 ORTHO05D003270 1.3e-17 93.2 94 62.8
A02p00920 Brassica napus HOM05D002942 ORTHO05D003270 2.3e-17 92.4 94 61.7
BraA02t05076Z Brassica rapa HOM05D002942 ORTHO05D003270 2.3e-17 92.4 94 61.7
Thhalv10004860m.g Eutrema salsugineum HOM05D002942 ORTHO05D003270 2.3e-17 92.4 94 62.8
TAR383G0122 Trochodendron aralioides HOM05D002942 ORTHO05D003270 2.3e-17 92.4 93 63.4
Sp2g22110 Schrenkiella parvula HOM05D002942 ORTHO05D003270 2.9e-17 92.0 94 62.8
THA.LOC104815040 Tarenaya hassleriana HOM05D002942 ORTHO05D003270 6.6e-17 90.9 97 58.8
Migut.A00054 Erythranthe guttata HOM05D002942 ORTHO05D003270 8.6e-17 90.5 95 63.2
HanXRQChr13g0403431 Helianthus annuus HOM05D002942 ORTHO05D003270 1.1e-16 90.1 95 54.7
Ca_18256_v3 Cicer arietinum L. HOM05D002942 ORTHO05D003270 1.9e-16 89.4 61 78.7
Ca_26349_v3 Cicer arietinum L. HOM05D002942 ORTHO05D003270 1.9e-16 89.4 61 78.7
Medtr3g436010 Medicago truncatula HOM05D002942 ORTHO05D003270 1.9e-16 89.4 61 77.0
BolC2t06452H Brassica oleracea HOM05D002942 ORTHO05D003270 2.5e-16 89.0 94 61.7
TPR.G8486 Trifolium pratense HOM05D002942 ORTHO05D003270 2.5e-16 89.0 61 77.0
Oeu024201.1 Olea europaea HOM05D002942 ORTHO05D003270 5.6e-16 87.8 93 61.3
Psat5g115640 Pisum sativum HOM05D002942 ORTHO05D003270 5.6e-16 87.8 61 75.4
unitig_37.g12938 Utricularia gibba HOM05D002942 ORTHO05D003270 5.6e-16 87.8 94 60.6
BolC9t59384H Brassica oleracea HOM05D002942 ORTHO05D003270 7.3e-16 87.4 95 65.3
Glyma.08G302500 Glycine max HOM05D002942 ORTHO05D003270 1.2e-15 86.7 61 80.3
C02p04940 Brassica napus HOM05D002942 ORTHO05D003270 1.6e-15 86.3 94 60.6
AUR62030640 Chenopodium quinoa HOM05D002942 ORTHO05D003270 1.6e-15 86.3 61 75.4
VMungo0540G1246 Vigna mungo HOM05D002942 ORTHO05D003270 2.1e-15 85.9 73 65.8
TAR626G0278 Trochodendron aralioides HOM05D002942 ORTHO05D003270 4.7e-15 84.7 93 61.3
A10p26460 Brassica napus HOM05D002942 ORTHO05D003270 8.0e-15 84.0 95 64.2
MBI01_g37815_MAGBIO Magnolia biondii HOM05D002942 ORTHO05D003270 8.0e-15 84.0 69 66.7
C09p65600 Brassica napus HOM05D000552 ORTHO05D003270 1.0e-14 83.6 95 67.4
Lj8A679T19 Lonicera japonica HOM05D002942 ORTHO05D003270 1.0e-14 83.6 94 56.4
Lj6g0022439 Lotus japonicus HOM05D002942 ORTHO05D003270 1.4e-14 83.2 61 75.4
ECA246G3899 Erigeron canadensis HOM05D002942 ORTHO05D003270 1.8e-14 82.8 74 66.2
vmacro11154 Vaccinium macrocarpon HOM05D002942 ORTHO05D003270 1.8e-14 82.8 60 78.3
Glyma.18G117100 Glycine max HOM05D002942 ORTHO05D003270 4.0e-14 81.6 61 75.4
Lalb_Chr18g0049281 Lupinus albus HOM05D002942 ORTHO05D003270 5.2e-14 81.3 61 70.5
PSO170G2824 Papaver somniferum HOM05D002942 ORTHO05D003270 5.2e-14 81.3 82 63.4
PSO455G0037 Papaver somniferum HOM05D002942 ORTHO05D003270 5.2e-14 81.3 82 63.4
Peaxi162Scf00073g01119 Petunia axillaris HOM05D002942 ORTHO05D003270 8.9e-14 80.5 103 59.2
Phvul.006G029200 Phaseolus vulgaris HOM05D002942 ORTHO05D003270 8.9e-14 80.5 73 65.8
arahy.Tifrunner.gnm1.ann1.C14L30 Arachis hypogaea HOM05D002942 ORTHO05D003270 2.0e-13 79.3 61 72.1
Aqoxy7G02115 Aquilegia oxysepala HOM05D002942 ORTHO05D003270 4.4e-13 78.2 100 53.0
Hund05826 Selenicereus undatus HOM05D002942 ORTHO05D003270 5.8e-13 77.8 61 72.1
SGA_v2.0_scaffold169G38721 Striga asiatica HOM05D002942 ORTHO05D003270 2.9e-12 75.5 111 48.6
arahy.Tifrunner.gnm1.ann1.BII4R6 Arachis hypogaea HOM05D002942 ORTHO05D003270 8.3e-12 73.9 61 68.9
Oeu042677.1 Olea europaea HOM05D002942 ORTHO05D003270 1.1e-11 73.6 93 50.5
arahy.Tifrunner.gnm1.ann1.VW4TEM Arachis hypogaea HOM05D002942 ORTHO05D003270 1.9e-11 72.8 61 68.9
CARHR202040 Cardamine hirsuta HOM05D002942 ORTHO05D003270 1.2e-10 70.1 77 54.5
Lj8A668G28 Lonicera japonica HOM05D002942 ORTHO05D003270 2.0e-10 69.3 60 63.3
arahy.Tifrunner.gnm1.ann1.XZ9EX0 Arachis hypogaea HOM05D002942 ORTHO05D003270 2.7e-10 68.9 61 65.6
Zm00001eb235510 Zea mays HOM05D002942 ORTHO05D003270 1.0e-09 67.0 98 51.0
HPP92_024600 Vanilla planifolia HOM05D002942 ORTHO05D003270 1.3e-09 66.6 93 51.6
Actinidia15681 Actinidia chinensis HOM05D002942 ORTHO05D003270 1.7e-09 66.2 60 68.3
CDE01G0364 Ceratophyllum demersum HOM05D002942 ORTHO05D003270 1.7e-09 66.2 94 55.3
CDE02G0788 Ceratophyllum demersum HOM05D002942 ORTHO05D003270 2.3e-09 65.9 74 62.2
ATR1156G010 Amborella trichopoda HOM05D002942 ORTHO05D003270 5.0e-09 64.7 64 62.5
HPP92_005149 Vanilla planifolia HOM05D002942 ORTHO05D003270 3.3e-08 62.0 75 56.0
Os02g0203000 Oryza sativa ssp. japonica HOM05D002942 ORTHO05D003270 5.6e-08 61.2 96 57.3
SalBow4G1537 Salvia bowleyana HOM05D002942 ORTHO05D003270 1.2e-07 60.1 69 53.6
CDE06G2210 Ceratophyllum demersum HOM05D002942 ORTHO05D003270 3.6e-07 58.5 75 50.7
CDE02G3898 Ceratophyllum demersum HOM05D002942 ORTHO05D003270 4.7e-07 58.2 74 56.8
CDE07G1565 Ceratophyllum demersum HOM05D002942 ORTHO05D003270 4.7e-07 58.2 75 50.7
Psat5g181280 Pisum sativum HOM05D002942 ORTHO05D003270 4.0e-06 55.1 48 64.6


User provided reference genes

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