Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 3806.9 1967 100.0
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 3154.0 1960 82.9
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2201.0 1975 60.1
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2182.9 1977 58.9
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2172.9 1972 59.2
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2168.7 2062 57.2
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2157.5 1988 58.2
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2150.2 1974 59.3
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2143.2 1975 58.9
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2133.6 1983 57.0
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2109.3 1973 56.4
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2109.0 1974 57.7
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2095.1 1973 57.4
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2090.8 1975 57.4
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2090.5 1977 57.2
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2080.8 1975 57.3
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2078.1 2017 56.5
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2057.0 1981 55.9
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2044.6 1991 55.7
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2043.5 1974 55.2
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2022.7 2183 52.3
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2006.5 1984 55.5
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2002.6 1980 55.1
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1996.1 1973 54.4
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1983.4 2079 53.1
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1964.9 2015 53.9
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1931.0 1974 53.4
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1929.1 1975 53.4
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1923.3 1980 53.6
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1914.0 1969 53.1
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1910.2 2009 53.3
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1892.9 1974 52.6
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1891.7 1966 53.5
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1874.0 1972 52.8
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1859.7 2067 50.7
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1850.9 1788 55.3
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1847.8 1983 51.5
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1832.4 1989 51.3
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1830.8 1989 51.1
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1825.8 1972 51.0
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1815.0 1976 49.9
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1813.1 2080 49.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1807.7 1974 49.9
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1793.9 1971 50.1
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1790.8 1971 50.9
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1780.8 1986 50.4
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1780.4 2030 49.4
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1778.5 1971 49.9
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1770.7 1971 49.6
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1764.2 1967 49.4
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1756.1 1971 49.6
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1750.7 1976 49.1
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1749.6 1979 49.1
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1747.3 1977 49.5
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1744.6 1980 49.3
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1741.5 2106 46.7
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1728.4 2000 49.0
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1725.7 2021 48.3
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1723.0 1995 47.9
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1711.4 1972 49.3
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1702.2 1985 48.0
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1692.6 1978 48.1
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1689.5 2024 46.9
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1683.7 1971 48.8
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1682.2 1988 46.8
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1676.8 1987 47.7
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1671.8 2020 47.9
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1665.6 1961 47.5
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1643.2 2189 44.0
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1622.8 1978 47.2
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1606.3 1732 51.7
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1583.5 1968 46.3
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1580.8 1991 46.3
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 0.0e+00 1576.6 1013 81.3
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1560.8 1834 47.2
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1427.2 1992 42.6
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1389.8 1391 54.9
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1349.3 1983 42.0
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1299.3 1492 49.8
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1258.8 1378 53.0
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1242.6 1397 50.8
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 0.0e+00 1210.3 742 84.8
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1187.6 1261 53.0
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1186.4 2315 36.7
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1078.9 2009 35.4
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 6.6e-285 985.3 1237 45.3
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.5e-260 904.4 2074 30.7
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.1e-244 851.7 1220 41.7
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 2.0e-244 850.9 2015 29.9
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.5e-233 813.5 1093 42.8
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 9.4e-231 805.4 790 53.8
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 6.3e-227 792.7 704 60.5
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.2e-224 784.3 2104 28.8
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 7.5e-220 769.2 656 61.7
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.7e-216 758.1 594 63.3
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 3.7e-187 660.6 739 49.4
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.0e-184 652.5 1331 34.6
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.1e-182 642.9 1425 30.7
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 8.1e-182 642.9 857 42.6
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 4.2e-170 604.0 479 64.3
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 7.1e-154 550.1 709 43.6
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 3.5e-153 547.7 734 42.8
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.3e-143 514.6 545 53.8
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 1.6e-142 512.3 801 41.7
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 3.7e-134 484.6 2193 23.7
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 5.3e-125 454.1 769 38.1
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 1.0e-120 439.9 506 47.0
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 7.7e-116 423.7 421 53.4
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 6.1e-113 414.1 394 56.9
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.2e-111 409.8 335 58.8
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.5e-108 397.9 232 87.5
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.9e-98 365.9 605 39.0
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.3e-96 359.0 750 34.1
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 7.5e-95 354.0 656 35.1
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.3e-91 342.4 634 36.0
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.3e-72 279.3 207 65.2
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 4.3e-58 231.9 478 31.2
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 1.1e-53 217.2 156 66.0
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 9.6e-50 204.1 208 53.4
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 3.1e-40 172.6 146 65.1
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 6.9e-40 171.4 341 36.7
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.9e-38 166.0 124 65.3
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 9.3e-37 161.0 151 54.3
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.1e-34 154.1 92 76.1
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 9.6e-34 151.0 132 59.1
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 5.3e-32 145.2 129 61.2
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.0e-31 143.3 588 25.7
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.7e-30 140.2 355 29.6
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.2e-29 134.8 100 65.0
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 9.7e-26 124.4 101 63.4
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 1.5e-23 117.1 124 46.8
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 3.4e-23 115.9 525 25.3
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.2e-20 107.5 200 36.0
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.2e-20 107.5 125 44.8
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 4.6e-20 105.5 112 48.2
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 3.0e-19 102.8 92 51.1
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 6.7e-19 101.7 100 48.0
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 1.1e-18 100.9 138 45.7
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.6e-18 99.8 237 31.2
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 2.2e-17 96.7 132 39.4
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-16 94.4 91 56.0
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 4.1e-16 92.4 64 70.3
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 4.5e-15 89.0 71 54.9
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 5.9e-15 88.6 110 50.0
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.9e-15 88.6 699 22.3
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 1.0e-14 87.8 156 39.7
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.1e-13 84.3 86 48.8
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.9e-13 83.6 112 45.5
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 1.6e-12 80.5 69 59.4
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 2.7e-12 79.7 52 67.3
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 7.9e-12 78.2 150 32.7
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 5.7e-10 72.0 87 47.1
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 7.4e-10 71.6 158 31.0
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 2.8e-09 69.7 89 42.7
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 3.7e-09 69.3 57 54.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 8.2e-09 68.2 62 54.8
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 2.4e-08 66.6 68 50.0
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.6e-07 63.9 156 30.8
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 1.7e-06 60.5 97 43.3
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 6.5e-06 58.5 106 38.7


User provided reference genes

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