Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 3662.8 1884 100.0
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 3344.7 1885 90.6
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 3144.4 2014 82.0
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 3088.5 1885 85.3
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2718.7 1889 73.1
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2702.5 1889 72.8
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2698.3 1889 72.5
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2697.2 1889 72.9
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2687.9 1884 72.8
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2679.8 1880 72.1
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2679.0 1887 71.3
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2649.0 1884 72.0
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2641.7 1884 71.4
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2637.1 1884 71.2
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2634.0 1892 71.0
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2629.7 1892 70.7
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2624.7 1888 70.8
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2613.2 1917 69.3
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2599.7 1893 69.6
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2596.6 1889 69.6
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2591.6 1922 70.0
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2589.3 1883 70.3
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2583.1 1903 69.3
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2582.4 1907 69.6
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2573.1 1889 69.8
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2572.7 1892 68.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2570.8 1891 69.3
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2563.9 1901 69.0
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2559.3 1890 69.6
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2550.8 1890 68.7
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2548.1 1892 68.3
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2546.2 1947 66.9
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2539.2 1886 68.5
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2536.5 1884 67.9
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2536.1 1892 68.1
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2525.7 1892 67.7
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2500.3 2019 65.2
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2493.0 1892 66.6
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2492.6 1888 66.8
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2492.6 1886 66.8
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2491.5 1890 68.3
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2488.8 1888 66.8
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2481.1 1714 73.7
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2474.1 1894 66.6
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2466.8 1887 66.5
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2465.6 1896 67.1
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2463.7 1889 66.3
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2457.2 1891 67.0
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2455.2 1889 66.6
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2454.5 1898 66.0
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2444.8 1887 66.0
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2420.2 1886 65.2
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2419.8 1889 65.7
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2416.7 1886 65.2
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2410.2 1891 65.4
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2407.9 1956 63.7
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2405.6 1887 65.2
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2400.2 1886 64.8
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2397.5 1883 64.9
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2394.0 1903 64.7
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2381.3 1890 64.2
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2375.9 1907 64.7
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2374.0 1952 63.3
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2333.9 1926 62.9
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2326.2 1633 71.9
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2322.0 1892 63.4
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2317.7 1886 62.7
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2312.7 2318 54.9
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2311.2 1890 62.9
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2308.9 1890 63.9
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2306.6 1891 62.9
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2290.4 1896 63.6
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2282.3 1925 62.5
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2256.9 1891 61.4
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2238.8 1889 62.2
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2238.4 1587 71.0
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2145.9 1510 72.9
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2097.8 1474 72.2
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1888.2 1581 61.2
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1874.8 1456 66.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1819.3 1425 65.5
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1723.4 1913 47.8
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1706.4 1187 72.6
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1702.6 1892 47.9
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1634.0 1919 47.0
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1620.5 1426 59.5
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1590.5 1448 57.5
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1554.3 1928 43.9
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1515.7 1885 48.0
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1395.6 1188 60.8
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1355.5 1246 57.5
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1309.3 1946 39.9
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1228.0 961 66.8
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1204.9 840 70.1
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1180.2 1125 56.8
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1094.0 1630 42.9
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 0.0e+00 1080.5 1244 49.0
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 7.2e-297 1025.0 782 66.1
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 5.0e-290 1002.3 1630 40.2
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 2.0e-262 910.6 810 56.8
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 8.1e-256 888.6 771 58.1
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 1.2e-251 874.8 698 67.5
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 2.0e-238 830.9 696 62.4
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.4e-228 798.1 1038 46.5
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.9e-206 723.0 714 53.1
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.3e-202 711.1 1036 39.9
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 4.0e-202 710.3 1043 41.1
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 2.6e-201 707.6 609 60.4
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-195 688.7 518 69.1
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.2e-179 635.6 509 65.0
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.0e-167 593.2 511 62.4
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 2.8e-131 474.9 398 58.8
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.1e-114 419.9 425 54.8
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 2.0e-113 415.6 413 57.4
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 6.9e-106 390.6 299 65.9
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.0e-93 350.1 228 76.3
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.4e-92 344.0 342 55.8
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.7e-91 342.8 210 82.4
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 2.4e-90 339.0 329 56.2
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.7e-88 332.8 322 56.2
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 4.7e-86 324.7 328 55.8
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.1e-86 324.3 366 48.1
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 4.8e-83 314.7 299 57.9
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 7.0e-82 310.8 277 58.8
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 1.0e-77 297.0 319 53.0
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 3.1e-74 285.4 266 60.2
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 3.5e-65 255.4 176 72.7
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.7e-59 235.3 181 65.2
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-57 229.6 230 54.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.0e-57 229.6 230 54.8
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 2.5e-55 222.6 211 58.3
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-54 219.5 413 40.9
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 8.3e-51 207.6 179 62.0
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 2.4e-50 206.1 1734 22.4
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.6e-49 203.4 296 43.6
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 2.0e-49 203.0 393 36.9
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 3.5e-49 202.2 216 53.7
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 3.0e-40 172.6 399 34.8
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.5e-39 170.2 173 57.8
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 6.2e-38 164.9 302 35.1
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.3e-35 157.1 151 55.6
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 8.4e-35 154.5 121 66.1
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 7.8e-33 147.9 125 63.2
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 3.9e-32 145.6 763 22.9
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.1e-32 145.2 122 56.6
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-30 140.6 81 74.1
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 2.2e-27 129.8 138 54.3
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 4.9e-27 128.6 187 43.9
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.4e-26 127.1 140 52.1
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 1.9e-26 126.7 978 22.4
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 1.6e-25 123.6 117 57.3
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 3.0e-24 119.4 74 79.7
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 5.1e-24 118.6 95 63.2
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 1.6e-22 113.6 106 56.6
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 8.1e-22 111.3 215 34.4
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.4e-20 105.9 103 48.5
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 9.9e-20 104.4 81 64.2
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 4.9e-19 102.1 74 64.9
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 1.8e-16 93.6 57 78.9
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 8.7e-16 91.3 55 72.7
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 1.9e-15 90.1 98 53.1
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 3.3e-15 89.4 98 53.1
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 7.4e-15 88.2 84 56.0
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 5.8e-12 78.6 78 55.1
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 3.8e-11 75.9 49 81.6
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 1.9e-10 73.6 134 43.3
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 4.2e-10 72.4 89 51.7
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 5.5e-10 72.0 37 81.1
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 7.1e-10 71.6 139 38.8
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 4.6e-09 68.9 63 61.9
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.0e-09 68.6 43 72.1
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.0e-08 67.8 64 50.0
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.1e-07 64.3 68 45.6
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.9e-07 63.5 64 53.1
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 2.5e-07 63.2 34 76.5
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 3.3e-07 62.8 41 68.3
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 5.6e-07 62.0 54 53.7
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 9.6e-07 61.2 52 63.5
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 1.6e-06 60.5 52 65.4


User provided reference genes

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