Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 0.0e+00 1192.9 587 100.0
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 0.0e+00 1100.1 587 91.5
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 0.0e+00 1092.4 587 91.3
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 0.0e+00 1088.9 587 91.1
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 3.1e-310 1067.8 587 89.4
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.2e-292 1008.4 587 83.3
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 2.3e-289 998.4 583 82.3
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.3e-289 998.4 585 81.4
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 3.9e-289 997.7 583 82.2
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 5.0e-289 997.3 591 82.2
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.5e-288 995.0 587 82.3
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 4.7e-287 990.7 587 81.4
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 6.2e-287 990.3 593 80.9
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.5e-285 985.7 581 81.8
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 4.4e-285 984.2 585 81.0
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 5.8e-285 983.8 589 81.2
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 5.8e-285 983.8 593 80.6
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 5.8e-285 983.8 587 79.7
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 5.8e-285 983.8 578 81.3
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.9e-284 981.5 582 80.9
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 8.3e-284 979.9 587 80.9
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.4e-283 978.4 587 80.7
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.1e-283 977.6 587 80.6
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 5.4e-283 977.2 587 79.4
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 7.1e-283 976.9 587 80.4
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 2.1e-282 975.3 587 79.9
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 2.7e-282 974.9 587 79.6
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 3.5e-282 974.5 580 80.3
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 4.6e-282 974.2 637 76.3
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 6.0e-282 973.8 581 80.6
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 7.8e-282 973.4 580 80.0
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 5.1e-281 970.7 585 80.5
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 5.1e-281 970.7 581 79.3
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.1e-280 969.5 585 79.5
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.9e-280 968.8 586 79.2
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.9e-280 968.8 585 79.1
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 5.6e-280 967.2 585 79.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 9.5e-280 966.5 543 84.3
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.2e-279 966.1 586 79.5
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.2e-279 966.1 583 79.4
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 1.6e-279 965.7 583 80.6
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 4.7e-279 964.1 589 78.8
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.1e-278 963.0 585 79.0
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 6.8e-278 960.3 585 78.6
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 6.8e-278 960.3 587 78.5
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 4.4e-277 957.6 578 79.4
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 5.8e-277 957.2 583 78.4
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 7.6e-277 956.8 587 78.0
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 6.4e-276 953.7 587 78.7
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 6.4e-276 953.7 598 77.3
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 1.1e-275 953.0 582 79.7
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.1e-275 953.0 584 78.1
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.1e-275 950.3 589 77.6
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 7.1e-275 950.3 573 79.1
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 9.2e-275 949.9 589 77.9
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 9.2e-275 949.9 584 77.6
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.2e-274 949.5 578 79.1
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 6.0e-274 947.2 583 78.2
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 7.8e-274 946.8 586 76.8
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.0e-273 946.4 579 79.1
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.9e-273 944.5 568 80.5
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.6e-273 943.7 589 77.4
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 6.6e-273 943.7 589 78.3
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 8.6e-273 943.3 579 77.5
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.5e-272 942.6 579 78.4
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 2.5e-272 941.8 588 76.9
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 4.3e-272 941.0 578 77.2
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.6e-271 939.1 582 76.8
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.6e-271 939.1 620 74.7
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.6e-271 939.1 585 77.1
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 2.1e-271 938.7 579 77.2
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 2.1e-271 938.7 578 77.9
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 3.6e-271 937.9 578 77.3
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 8.1e-271 936.8 580 76.9
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 8.1e-271 936.8 582 77.0
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 1.1e-270 936.4 578 76.6
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 3.1e-270 934.9 585 76.4
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.2e-269 932.9 585 76.1
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.2e-269 932.9 585 76.9
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.0e-269 932.2 570 77.9
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 2.6e-269 931.8 594 75.8
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 5.8e-269 930.6 581 76.6
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 7.6e-269 930.2 588 76.7
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.3e-268 929.5 553 79.7
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 1.7e-268 929.1 580 77.1
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.7e-268 929.1 587 77.7
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 2.9e-268 928.3 580 76.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.9e-268 928.3 571 77.6
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 3.8e-268 927.9 580 76.9
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.1e-267 926.4 561 78.6
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.1e-267 926.4 517 84.5
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.9e-267 925.6 587 76.7
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 3.2e-267 924.9 546 80.0
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.1e-266 922.2 580 76.9
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 1.0e-265 919.8 548 79.7
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 6.6e-265 917.1 560 76.8
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.1e-264 916.4 552 77.7
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.6e-263 912.5 546 78.9
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 4.8e-263 911.0 553 79.6
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 8.1e-263 910.2 531 81.2
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 3.1e-262 908.3 684 67.1
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.3e-260 902.9 583 74.3
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 2.7e-258 895.2 588 74.7
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 2.3e-257 892.1 584 74.8
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 8.7e-257 890.2 584 74.7
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 3.6e-255 884.8 588 73.6
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 1.2e-253 879.8 532 78.2
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 8.4e-252 873.6 579 73.6
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 2.3e-249 865.5 577 73.0
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.1e-248 863.2 555 73.0
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 9.0e-246 853.6 587 71.4
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 3.8e-244 848.2 585 72.6
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.1e-239 832.4 577 71.4
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 2.3e-233 812.4 497 78.1
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-232 810.1 448 85.5
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.3e-231 806.6 550 72.4
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 2.2e-231 805.8 448 84.4
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 3.7e-231 805.1 584 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 2.5e-227 792.3 593 65.3
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 4.2e-227 791.6 548 71.5
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.0e-225 786.9 439 85.0
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.8e-223 778.9 603 63.0
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 2.8e-207 725.7 517 68.7
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 3.6e-194 682.2 450 72.0
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.3e-191 671.4 494 68.0
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 4.9e-183 645.2 538 59.7
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 8.9e-177 624.4 361 82.3
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 7.5e-168 594.7 344 82.0
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.4e-158 563.9 587 53.7
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.2e-143 513.5 278 86.7
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.9e-143 512.3 573 47.3
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.0e-140 504.6 339 73.5
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 7.4e-139 498.4 280 83.2
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 9.0e-137 491.5 417 61.2
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 4.6e-133 479.2 544 50.2
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 1.9e-123 447.2 306 71.6
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 7.9e-117 425.2 574 43.4
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.9e-110 404.1 288 67.4
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.9e-95 353.6 643 35.9
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 5.0e-87 326.2 183 83.1
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 2.1e-85 320.9 263 64.6
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 3.6e-85 320.1 179 84.4
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.3e-82 311.6 179 82.7
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.2e-82 310.8 188 77.1
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.7e-79 301.2 167 84.4
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 5.5e-78 296.2 593 34.7
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 2.7e-77 293.9 499 37.1
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.1e-73 282.0 585 33.8
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.9e-66 257.3 321 47.0
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 3.7e-66 256.9 609 32.5
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.6e-63 246.1 140 82.9
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 9.5e-62 242.3 625 29.9
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.2e-59 235.3 197 60.9
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 4.9e-50 203.4 120 81.7
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-46 192.2 117 77.8
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 4.0e-44 183.7 107 81.3
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.3e-42 178.7 101 84.2
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 3.5e-40 170.6 155 58.1
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.2e-33 147.5 132 57.6
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 2.1e-29 134.8 67 91.0
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.1e-28 132.5 139 51.8
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-28 131.7 123 56.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.3e-26 125.6 64 90.6
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 2.2e-26 124.8 77 72.7
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 7.9e-24 116.3 97 59.8
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 9.0e-20 102.8 63 74.6
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 9.0e-12 76.3 74 58.1
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.8e-11 73.6 54 66.7
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 7.6e-11 73.2 78 55.1
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.3e-07 61.6 70 48.6
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.5e-06 58.9 65 49.2
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 4.3e-06 57.4 38 63.2


User provided reference genes

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