Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 1.5e-100 369.4 174 100.0
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.6e-60 235.7 171 71.9
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 4.5e-60 235.0 169 72.8
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 8.5e-59 230.7 168 72.0
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.3e-54 216.9 156 69.2
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 1.7e-54 216.5 136 75.0
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 8.2e-54 214.2 141 73.8
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 1.8e-53 213.0 155 68.4
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 3.1e-53 212.2 115 84.3
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 3.1e-53 212.2 112 84.8
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 4.1e-53 211.8 116 83.6
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 4.1e-53 211.8 170 62.9
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 5.3e-53 211.5 166 65.1
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 9.1e-53 210.7 181 61.9
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 9.1e-53 210.7 166 65.1
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 9.1e-53 210.7 112 83.0
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 1.2e-52 210.3 115 81.7
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 1.5e-52 209.9 114 84.2
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 2.0e-52 209.5 116 81.9
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 2.6e-52 209.1 136 74.3
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 2.6e-52 209.1 136 74.3
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.6e-52 209.1 116 82.8
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.6e-52 209.1 115 84.3
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 3.4e-52 208.8 116 81.0
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 3.4e-52 208.8 115 81.7
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.4e-52 208.8 116 82.8
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 4.5e-52 208.4 163 66.3
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 7.7e-52 207.6 170 63.5
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 7.7e-52 207.6 172 59.3
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 1.7e-51 206.5 166 63.9
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 1.7e-51 206.5 116 82.8
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 1.7e-51 206.5 116 80.2
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 2.2e-51 206.1 108 84.3
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.8e-51 205.3 134 71.6
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 5.0e-51 204.9 127 78.0
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 8.5e-51 204.1 138 68.8
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.1e-50 203.8 169 62.1
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 1.1e-50 203.8 111 78.4
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 1.4e-50 203.4 115 80.0
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 1.9e-50 203.0 114 81.6
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 1.9e-50 203.0 114 81.6
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 2.5e-50 202.6 162 62.3
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 2.5e-50 202.6 116 76.7
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 2.5e-50 202.6 116 77.6
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.5e-50 202.6 114 80.7
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 3.2e-50 202.2 120 75.0
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 3.2e-50 202.2 120 75.0
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 3.2e-50 202.2 120 75.0
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 3.2e-50 202.2 120 75.0
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 3.2e-50 202.2 120 75.0
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 4.2e-50 201.8 116 76.7
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 4.2e-50 201.8 120 74.2
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 5.5e-50 201.4 123 74.0
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 7.2e-50 201.1 116 76.7
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 9.4e-50 200.7 121 73.6
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 9.4e-50 200.7 140 68.6
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 1.2e-49 200.3 141 67.4
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.6e-49 199.9 121 72.7
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.6e-49 199.9 115 79.1
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 2.1e-49 199.5 116 76.7
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 3.6e-49 198.7 116 75.9
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 3.6e-49 198.7 126 73.8
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 4.7e-49 198.4 138 70.3
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 4.7e-49 198.4 161 63.4
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 4.7e-49 198.4 111 79.3
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 6.1e-49 198.0 159 61.0
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 8.0e-49 197.6 169 60.9
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 8.0e-49 197.6 118 78.0
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.0e-48 197.2 118 78.0
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 2.3e-48 196.1 108 79.6
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 5.2e-48 194.9 169 58.6
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 5.2e-48 194.9 142 66.2
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 6.7e-48 194.5 133 68.4
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 6.7e-48 194.5 167 58.7
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.5e-47 193.4 173 58.4
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 1.5e-47 193.4 107 82.2
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 2.0e-47 193.0 120 76.7
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 2.6e-47 192.6 115 76.5
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 3.3e-47 192.2 112 77.7
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.3e-46 190.3 121 72.7
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 1.7e-46 189.9 165 61.8
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 1.7e-46 189.9 130 70.0
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 3.7e-46 188.7 126 69.0
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 4.8e-46 188.3 172 57.6
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 6.3e-46 188.0 112 75.0
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.4e-45 186.0 110 73.6
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 5.3e-45 184.9 155 63.9
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 7.0e-45 184.5 198 53.0
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 7.0e-45 184.5 169 59.2
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 4.5e-44 181.8 155 61.9
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 5.9e-44 181.4 115 72.2
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 5.9e-44 181.4 112 75.0
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.4e-40 170.2 103 73.8
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 1.4e-40 170.2 177 53.1
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.1e-37 160.6 159 52.8
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 4.1e-37 158.7 159 52.2
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 4.1e-37 158.7 153 56.2
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.9e-36 154.8 91 72.5
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 1.0e-35 154.1 121 56.2
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 1.0e-35 154.1 121 57.0
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 3.6e-33 145.6 164 49.4
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 5.2e-32 141.7 147 49.7
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 6.8e-32 141.4 108 56.5
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 8.8e-32 141.0 140 52.1
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 8.8e-32 141.0 106 56.6
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 1.5e-31 140.2 153 49.0
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 1.5e-31 140.2 171 47.4
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.6e-31 139.4 143 51.0
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 2.6e-31 139.4 110 58.2
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 3.4e-31 139.0 163 46.0
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 4.4e-31 138.7 141 49.6
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 7.5e-31 137.9 126 49.2
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 9.8e-31 137.5 145 47.6
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 9.8e-31 137.5 158 47.5
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 2.2e-30 136.3 140 49.3
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 2.2e-30 136.3 161 46.0
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 8.3e-30 134.4 105 57.1
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 8.3e-30 134.4 104 59.6
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 1.1e-29 134.0 133 50.4
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 1.1e-29 134.0 166 44.0
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 1.4e-29 133.7 141 48.9
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.4e-29 132.9 165 43.6
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 2.4e-29 132.9 146 45.2
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 4.1e-29 132.1 152 51.3
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 4.1e-29 132.1 104 56.7
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 4.1e-29 132.1 157 45.2
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.1e-29 132.1 157 45.2
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 4.1e-29 132.1 161 45.3
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 4.1e-29 132.1 172 40.7
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 1.2e-28 130.6 152 45.4
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 2.0e-28 129.8 139 46.0
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 2.0e-28 129.8 156 42.3
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 2.7e-28 129.4 147 42.9
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 2.7e-28 129.4 148 45.3
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.5e-28 128.6 157 43.9
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 4.5e-28 128.6 114 53.5
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 5.9e-28 128.3 162 45.7
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 1.0e-27 127.5 63 84.1
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.7e-27 126.7 159 44.0
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 1.7e-27 126.7 173 42.2
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 2.3e-27 126.3 107 52.3
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 2.9e-27 125.9 154 43.5
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.1e-26 124.0 63 82.5
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.5e-26 123.6 93 61.3
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.9e-26 123.2 162 44.4
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 2.1e-25 119.8 152 44.1
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 3.6e-25 119.0 156 41.0
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 8.0e-25 117.9 144 47.2
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.0e-24 117.5 105 48.6
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.3e-24 116.3 169 37.9
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.3e-24 116.3 101 56.4
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 3.0e-24 115.9 181 39.2
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 6.8e-24 114.8 120 44.2
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.2e-23 114.0 106 48.1
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.2e-23 114.0 97 51.5
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 1.5e-23 113.6 104 49.0
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 9.8e-23 110.9 158 41.1
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 4.1e-21 105.5 54 79.6
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 9.2e-21 104.4 98 54.1
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.2e-20 104.0 165 37.6
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 4.5e-20 102.1 178 36.5
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 4.5e-20 102.1 59 69.5
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 8.6e-19 97.8 189 31.7
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 1.9e-18 96.7 109 45.9
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 2.1e-17 93.2 141 36.9
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 8.0e-17 91.3 91 44.0
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 4.0e-16 89.0 212 28.3
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 7.5e-15 84.7 59 57.6
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 3.5e-12 75.9 101 51.5
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 8.6e-11 71.2 95 36.8
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.9e-10 70.1 78 42.3
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 4.7e-09 65.5 92 44.6
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 1.1e-08 64.3 81 48.1
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 3.4e-07 59.3 103 38.8
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 9.8e-07 57.8 43 60.5
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 1.7e-06 57.0 103 39.8
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 2.9e-06 56.2 113 38.1
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 3.7e-06 55.8 92 40.2
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 8.3e-06 54.7 93 38.7


User provided reference genes

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