Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 0.0e+00 1300.8 681 100.0
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 0.0e+00 1175.2 680 87.9
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 0.0e+00 1167.5 680 88.4
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 4.2e-282 974.5 697 71.6
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 3.0e-280 968.4 682 72.6
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 2.6e-279 965.3 698 71.1
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 8.3e-278 960.3 684 71.9
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 3.1e-277 958.4 682 73.0
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 7.0e-277 957.2 657 72.6
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 7.3e-274 947.2 685 70.2
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 7.3e-274 947.2 688 70.1
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 7.5e-271 937.2 665 72.0
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 4.9e-270 934.5 685 70.4
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 8.3e-270 933.7 665 70.2
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 7.0e-269 930.6 680 72.4
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.6e-268 929.5 675 72.4
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 3.5e-268 928.3 667 69.3
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.0e-267 926.8 674 70.0
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.7e-267 926.0 688 71.2
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.7e-267 926.0 688 71.2
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 8.6e-267 923.7 683 68.4
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 8.6e-267 923.7 683 68.4
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 2.5e-266 922.2 685 68.2
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 4.3e-266 921.4 683 68.8
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 4.3e-266 921.4 688 68.3
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 3.6e-265 918.3 685 69.9
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 4.7e-265 917.9 684 68.1
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 3.1e-264 915.2 692 68.6
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 6.8e-264 914.1 719 66.1
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.6e-263 912.1 684 68.3
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 4.9e-262 907.9 683 66.9
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 3.2e-261 905.2 674 72.3
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 4.3e-258 894.8 658 67.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 5.6e-258 894.4 684 67.4
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.6e-257 891.7 679 66.0
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.7e-257 891.3 653 69.4
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.1e-256 890.2 738 64.6
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 2.3e-256 889.0 690 66.8
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 2.0e-255 885.9 685 66.7
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 1.3e-254 883.2 679 67.5
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 3.7e-254 881.7 680 65.4
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 2.4e-253 879.0 674 65.7
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 2.7e-252 875.5 675 67.0
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 2.7e-252 875.5 682 66.3
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 6.0e-252 874.4 677 65.1
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 1.0e-251 873.6 680 65.1
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.3e-251 873.2 674 64.7
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 5.1e-251 871.3 662 66.6
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.1e-250 870.2 680 65.0
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.5e-250 869.0 712 63.8
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 4.7e-249 864.8 651 66.1
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.8e-248 862.8 658 65.3
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 2.4e-248 862.4 683 64.1
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 3.1e-248 862.1 688 63.8
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 5.8e-247 857.8 677 64.3
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 7.6e-247 857.4 688 64.2
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.3e-246 856.7 693 63.8
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 2.9e-246 855.5 665 65.7
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 5.4e-245 851.3 676 64.3
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 5.4e-245 851.3 709 62.9
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 7.8e-244 847.4 684 64.9
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 3.3e-242 842.0 659 65.3
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 7.3e-242 840.9 691 66.0
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 2.4e-240 835.9 695 65.3
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 3.4e-239 832.0 696 61.6
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.3e-238 830.1 672 65.0
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 2.9e-238 828.9 684 63.6
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 6.4e-238 827.8 674 64.4
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 2.1e-236 822.8 693 64.2
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 3.5e-236 822.0 674 63.8
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.3e-235 820.1 671 65.3
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 3.9e-235 818.5 653 65.4
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 8.7e-235 817.4 677 62.3
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-234 816.2 667 64.9
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.9e-234 816.2 667 64.9
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 2.5e-234 815.8 669 65.0
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 6.2e-233 811.2 691 63.4
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 6.2e-233 811.2 655 63.5
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 4.0e-232 808.5 682 61.9
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 9.0e-232 807.4 580 70.7
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.2e-231 807.0 670 64.2
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 5.8e-231 804.7 670 64.0
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 7.9e-228 794.3 689 59.8
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 6.7e-227 791.2 511 74.0
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.1e-225 786.2 681 58.0
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 8.7e-219 764.2 684 60.4
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 8.7e-219 764.2 684 60.4
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 2.8e-217 759.2 691 59.5
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.8e-216 756.5 691 59.3
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 9.0e-216 754.2 1006 44.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.1e-213 747.3 682 57.8
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 1.6e-212 743.4 698 58.6
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.5e-210 736.9 684 58.5
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.5e-210 736.9 453 79.0
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 4.1e-208 728.8 653 61.1
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.1e-200 704.1 683 54.3
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 1.5e-194 683.7 665 54.1
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 1.1e-192 677.6 512 65.6
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 1.2e-191 674.1 697 51.1
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 5.5e-189 665.2 802 47.5
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 7.2e-189 664.8 665 55.9
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 5.7e-186 655.2 520 65.4
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 3.7e-185 652.5 658 52.6
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 5.5e-181 638.6 439 71.8
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 3.8e-166 589.3 424 66.0
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 2.2e-153 547.0 694 43.5
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.4e-152 543.5 575 52.7
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 2.4e-152 543.5 518 56.0
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 5.2e-147 525.8 555 56.9
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.1e-136 491.5 704 40.2
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 4.3e-133 479.6 711 40.9
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.2e-120 436.8 450 55.3
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.1e-117 428.3 435 52.9
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.2e-114 418.3 538 41.1
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.1e-111 407.5 405 58.3
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 8.7e-94 349.0 300 59.7
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 6.5e-89 332.8 429 49.0
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 2.4e-83 314.3 620 33.7
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-83 314.3 372 52.7
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 3.1e-83 313.9 658 36.0
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.6e-79 301.6 219 69.4
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 8.8e-78 295.8 280 55.7
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 4.5e-66 256.9 350 46.6
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 3.8e-65 253.8 262 62.6
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 4.7e-63 246.9 257 52.9
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 1.8e-62 245.0 255 55.3
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 4.4e-61 240.4 258 62.4
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 4.4e-61 240.4 258 62.8
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-60 238.4 241 53.5
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.5e-56 225.3 141 78.0
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 5.5e-56 223.4 130 81.5
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.5e-53 215.3 263 45.6
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 7.0e-51 206.5 197 53.3
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 4.4e-45 187.2 119 78.2
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 2.7e-42 177.9 233 53.2
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.7e-41 175.3 105 77.1
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-37 162.5 102 77.5
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.5e-37 162.2 102 77.5
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.0e-37 161.8 120 67.5
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 4.4e-37 160.6 120 62.5
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 2.2e-36 158.3 149 54.4
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.4e-35 155.6 103 74.8
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 9.2e-35 152.9 176 46.0
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-34 152.5 225 41.3
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.8e-34 149.8 89 77.5
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.8e-34 149.8 89 77.5
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.8e-34 149.8 89 77.5
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.9e-32 145.2 85 77.6
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 4.3e-32 144.1 145 55.9
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 5.6e-32 143.7 201 44.8
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 7.3e-32 143.3 107 62.6
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 4.7e-31 140.6 208 39.9
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 5.2e-30 137.1 79 79.7
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 2.6e-29 134.8 79 79.7
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.4e-27 129.0 104 61.5
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-25 122.5 107 62.6
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 6.6e-25 120.2 182 52.7
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.3e-22 111.7 70 68.6
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 8.3e-20 103.2 72 61.1
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-19 102.1 62 74.2
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 3.2e-19 101.3 89 61.8
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 4.1e-19 100.9 77 64.9
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 9.2e-19 99.8 62 74.2
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-18 98.2 64 70.3
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 6.0e-18 97.1 56 73.2
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 1.0e-17 96.3 57 71.9
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 2.3e-17 95.1 57 70.2
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 3.0e-17 94.7 97 52.6
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 3.0e-17 94.7 55 72.7
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 6.2e-15 87.0 55 63.6
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 6.2e-15 87.0 104 45.2
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 1.1e-14 86.3 48 81.2
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.4e-14 85.9 50 78.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.4e-14 85.9 50 78.0
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 1.8e-14 85.5 98 48.0
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-13 82.4 63 63.5
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 4.4e-13 80.9 47 78.7
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 7.6e-13 80.1 77 54.5
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 2.2e-12 78.6 60 63.3
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-11 75.9 197 41.1
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 5.4e-11 73.9 71 59.2
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-10 72.4 197 35.5
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 6.0e-10 70.5 142 33.8
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-08 65.9 178 32.6
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 5.6e-08 63.9 42 69.0
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 3.1e-06 58.2 36 66.7
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 3.1e-06 58.2 95 44.2


User provided reference genes

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