Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 2.8e-233 811.6 412 100.0
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 8.9e-216 753.4 412 90.8
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 3.4e-215 751.5 412 91.0
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.9e-214 748.4 412 91.0
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.8e-208 729.2 412 87.9
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 6.4e-198 694.1 411 82.5
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.7e-195 686.0 413 80.6
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.3e-193 679.9 410 81.5
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.3e-193 679.9 412 80.8
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.3e-193 679.9 411 79.8
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.6e-193 679.5 412 80.6
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.4e-192 676.4 412 79.4
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.1e-192 675.2 412 79.1
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 3.1e-192 675.2 412 79.4
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.2e-191 673.3 414 78.5
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.5e-191 672.9 416 81.7
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 4.4e-191 671.4 412 78.6
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 4.4e-191 671.4 413 80.4
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 5.8e-191 671.0 414 80.7
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 7.6e-191 670.6 412 77.7
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 7.6e-191 670.6 416 81.2
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 9.9e-191 670.2 412 78.4
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 9.9e-191 670.2 413 79.7
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.3e-190 669.8 412 78.6
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.7e-190 669.5 412 78.9
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 6.4e-190 667.5 414 80.9
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 8.4e-190 667.2 414 78.0
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 8.4e-190 667.2 412 77.9
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 3.2e-189 665.2 413 77.5
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 9.3e-189 663.7 417 78.2
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.1e-188 662.5 412 78.9
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 4.6e-188 661.4 412 77.4
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 6.0e-188 661.0 412 77.4
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.3e-187 659.8 416 77.9
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 2.3e-187 659.1 415 80.7
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.3e-187 659.1 413 78.7
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 2.3e-187 659.1 413 77.0
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.5e-186 656.4 409 79.2
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 3.3e-186 655.2 415 79.5
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 4.3e-186 654.8 412 78.6
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 4.3e-186 654.8 412 76.9
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 5.6e-186 654.4 412 77.4
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 7.3e-186 654.1 415 79.5
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 7.3e-186 654.1 410 77.8
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 9.6e-186 653.7 413 77.2
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 9.6e-186 653.7 415 78.6
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 9.6e-186 653.7 409 79.0
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 4.8e-185 651.4 409 78.0
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 6.2e-185 651.0 412 77.4
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 2.4e-184 649.0 413 78.0
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 6.9e-184 647.5 412 78.4
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.2e-183 646.7 412 75.5
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 3.4e-183 645.2 411 77.4
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 5.8e-183 644.4 412 75.5
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 7.6e-183 644.0 415 76.6
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 2.2e-182 642.5 414 76.1
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.8e-182 641.7 410 75.6
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 2.4e-181 639.0 414 76.1
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 7.1e-181 637.5 412 76.2
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 7.1e-181 637.5 413 75.5
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 7.1e-181 637.5 412 76.7
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.6e-180 636.3 412 73.1
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 4.6e-180 634.8 412 74.8
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 7.9e-180 634.0 412 76.0
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.8e-179 632.9 413 75.1
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 2.3e-179 632.5 445 71.5
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 9.6e-178 627.1 413 73.6
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 2.8e-177 625.5 413 74.8
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 8.1e-177 624.0 376 78.7
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 8.1e-177 624.0 455 67.9
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.4e-176 623.2 413 73.4
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 2.4e-176 622.5 413 73.4
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 3.1e-176 622.1 412 73.1
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 4.0e-176 621.7 413 73.6
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 6.9e-176 620.9 479 65.6
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.2e-175 620.2 413 73.4
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.5e-175 619.8 414 72.7
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 2.0e-175 619.4 413 73.1
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 2.0e-175 619.4 413 73.1
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 7.6e-175 617.5 412 72.1
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.3e-174 616.7 413 73.8
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 2.2e-174 615.9 413 72.9
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.2e-174 615.9 412 72.1
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.9e-174 615.5 412 72.6
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 3.8e-174 615.1 410 73.7
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.1e-173 613.6 413 73.1
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.1e-173 613.6 413 74.3
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.1e-173 613.6 413 74.3
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.9e-173 612.8 413 72.4
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.9e-173 612.8 413 73.8
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.5e-173 612.5 508 63.6
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.2e-173 611.7 413 74.1
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 5.5e-173 611.3 413 72.2
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.5e-173 611.3 413 72.2
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.2e-172 610.1 413 73.1
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.6e-172 609.8 417 70.5
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.7e-172 609.0 412 70.6
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.0e-171 607.1 413 72.6
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.0e-171 607.1 403 76.2
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.8e-171 606.3 412 71.4
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 3.0e-171 605.5 410 71.2
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 3.0e-171 605.5 414 71.0
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.1e-170 603.6 413 72.2
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.5e-170 603.2 413 72.2
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 7.4e-170 600.9 413 71.9
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 9.6e-170 600.5 414 70.8
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.4e-168 595.9 412 69.2
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 8.4e-166 587.4 411 69.3
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.4e-165 586.6 410 70.5
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 9.3e-165 583.9 417 67.6
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 8.7e-163 577.4 420 70.7
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.9e-162 576.2 417 66.9
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 5.5e-157 558.1 466 59.9
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.5e-154 550.1 429 64.3
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.7e-153 545.4 418 65.6
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.2e-151 540.4 350 76.3
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 5.0e-150 535.0 409 63.8
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 9.7e-146 520.8 306 82.0
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 9.4e-141 504.2 410 59.5
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.4e-139 500.4 350 72.6
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 5.2e-139 498.4 329 73.6
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 3.7e-137 492.3 409 58.9
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 1.2e-135 487.3 332 71.7
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 2.2e-129 466.5 409 57.2
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.0e-127 459.9 419 58.2
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 5.9e-127 458.4 334 66.5
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 9.4e-125 451.1 418 56.9
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 5.2e-123 445.3 418 56.5
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.3e-110 403.3 234 81.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 3.3e-101 372.9 243 73.7
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 2.4e-88 330.1 431 44.8
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.7e-78 297.4 181 79.6
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 1.4e-72 277.7 391 42.7
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 3.2e-72 276.6 237 62.4
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.9e-65 253.4 331 42.6
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.9e-57 226.9 188 64.9
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 6.7e-46 189.1 241 49.4
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 1.9e-45 187.6 115 81.7
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 3.2e-40 170.2 219 45.2
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 2.2e-36 157.5 125 60.0
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.1e-32 145.2 80 82.5
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.6e-26 124.8 104 59.6
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 5.9e-26 122.9 84 67.9
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 1.2e-23 115.2 183 42.6
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 1.4e-22 111.7 74 68.9
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 1.4e-22 111.7 74 68.9
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 8.8e-22 109.0 74 67.6
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 4.4e-21 106.7 90 60.0
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.3e-20 105.1 88 62.5
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.3e-20 105.1 88 62.5
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 4.1e-19 100.1 83 61.4
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 5.3e-19 99.8 88 61.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 5.9e-18 96.3 81 58.0
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.5e-16 90.9 66 62.1
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 3.6e-15 87.0 73 58.9
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.2e-13 82.0 65 56.9
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 4.8e-12 76.6 59 62.7
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.7e-09 68.2 115 40.0
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 2.2e-09 67.8 115 39.1
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 5.0e-09 66.6 86 45.3
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 8.0e-07 59.3 124 34.7


User provided reference genes

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