Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 8.9e-66 253.4 127 100.0
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 4.4e-57 224.6 127 86.6
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 3.5e-54 214.9 127 83.5
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 8.7e-53 210.3 119 84.0
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 8.7e-53 210.3 119 84.9
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 5.6e-52 207.6 119 82.4
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 7.3e-52 207.2 119 82.4
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 7.3e-52 207.2 119 82.4
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 2.8e-51 205.3 123 78.0
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 3.6e-51 204.9 133 77.4
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 6.2e-51 204.1 119 82.4
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 6.2e-51 204.1 119 79.0
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 1.1e-50 203.4 119 80.7
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 1.1e-50 203.4 119 80.7
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 2.4e-50 202.2 121 79.3
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 3.1e-50 201.8 119 79.8
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 3.1e-50 201.8 123 77.2
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 3.1e-50 201.8 123 76.4
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 4.0e-50 201.4 127 74.0
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 5.2e-50 201.1 123 78.0
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.2e-50 201.1 123 78.0
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.2e-50 201.1 123 78.0
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.2e-50 201.1 123 78.0
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 5.2e-50 201.1 123 77.2
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 9.0e-50 200.3 121 77.7
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 9.0e-50 200.3 123 77.2
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 9.0e-50 200.3 118 79.7
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 1.2e-49 199.9 123 78.9
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.5e-49 199.5 123 77.2
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.0e-49 199.1 122 77.9
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 2.6e-49 198.7 127 76.4
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 2.6e-49 198.7 121 76.0
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 4.4e-49 198.0 121 76.9
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 5.8e-49 197.6 123 74.0
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 5.8e-49 197.6 123 76.4
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 7.6e-49 197.2 121 77.7
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 9.9e-49 196.8 124 75.8
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 9.9e-49 196.8 118 78.8
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 9.9e-49 196.8 119 79.0
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 9.9e-49 196.8 123 74.8
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 9.9e-49 196.8 123 74.0
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.3e-48 196.4 123 75.6
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.3e-48 196.4 123 76.4
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.3e-48 196.4 119 78.2
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.3e-48 196.4 121 78.5
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.7e-48 196.1 121 76.9
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.7e-48 196.1 121 78.5
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 3.8e-48 194.9 121 78.5
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 3.8e-48 194.9 121 75.2
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 3.8e-48 194.9 121 76.0
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.8e-48 194.9 123 75.6
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 3.8e-48 194.9 119 77.3
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 4.9e-48 194.5 123 73.2
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 4.9e-48 194.5 119 78.2
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 4.9e-48 194.5 119 76.5
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 6.4e-48 194.1 123 74.0
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 6.4e-48 194.1 119 76.5
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.1e-47 193.4 123 72.4
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.1e-47 193.4 127 74.0
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.1e-47 193.4 127 74.0
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 1.1e-47 193.4 119 78.2
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.1e-47 193.4 123 73.2
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.4e-47 193.0 119 75.6
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.4e-47 193.0 119 75.6
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.4e-47 193.0 119 75.6
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 1.9e-47 192.6 123 72.4
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 1.9e-47 192.6 123 72.4
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 1.9e-47 192.6 123 72.4
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 1.9e-47 192.6 123 72.4
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 1.9e-47 192.6 123 72.4
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 1.9e-47 192.6 150 66.0
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.9e-47 192.6 123 75.6
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.9e-47 192.6 123 76.4
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.4e-47 192.2 122 76.2
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 2.4e-47 192.2 123 72.4
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 3.2e-47 191.8 123 72.4
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 4.2e-47 191.4 123 71.5
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 4.2e-47 191.4 123 71.5
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 4.2e-47 191.4 123 73.2
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 5.4e-47 191.0 122 73.0
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 5.4e-47 191.0 121 73.6
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 9.3e-47 190.3 123 74.0
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 1.6e-46 189.5 123 74.8
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 2.1e-46 189.1 110 80.9
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 2.1e-46 189.1 119 73.1
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 2.1e-46 189.1 123 73.2
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 2.7e-46 188.7 123 73.2
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 2.7e-46 188.7 121 73.6
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 3.5e-46 188.3 123 70.7
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.5e-46 188.3 121 76.9
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 7.8e-46 187.2 119 73.9
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 7.8e-46 187.2 121 71.9
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 1.0e-45 186.8 121 74.4
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.3e-45 186.4 119 72.3
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 2.3e-45 185.7 119 71.4
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 5.1e-45 184.5 119 73.1
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 5.1e-45 184.5 119 73.9
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 6.6e-45 184.1 119 72.3
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.5e-44 183.0 109 78.9
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 1.9e-44 182.6 123 69.1
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.6e-43 179.5 123 71.5
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.1e-43 179.1 124 69.4
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.1e-43 179.1 123 69.9
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 3.1e-42 175.3 123 69.9
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 3.1e-42 175.3 119 68.1
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 4.0e-42 174.9 123 69.1
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 5.3e-42 174.5 123 69.1
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 2.0e-41 172.6 123 69.1
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.7e-40 169.5 121 66.9
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.7e-40 169.5 123 66.7
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.8e-40 168.3 123 66.7
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 8.4e-40 167.2 121 67.8
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 8.4e-40 167.2 119 68.1
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.9e-39 166.0 123 62.6
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 3.2e-39 165.2 119 67.2
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 4.2e-39 164.9 122 68.9
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 4.2e-39 164.9 127 63.8
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 5.4e-39 164.5 119 69.7
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 5.4e-39 164.5 119 69.7
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 3.5e-38 161.8 126 65.1
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 3.5e-38 161.8 121 65.3
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 5.6e-36 154.5 119 62.2
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 1.3e-35 153.3 108 66.7
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 4.8e-35 151.4 99 71.7
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 6.2e-35 151.0 122 63.1
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 4.5e-33 144.8 115 59.1
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 5.8e-33 144.4 110 61.8
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.4e-31 139.0 95 66.3
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.8e-29 132.9 83 75.9
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 4.3e-28 128.3 119 52.1
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 4.3e-28 128.3 119 58.0
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 4.0e-26 121.7 118 56.8
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 4.5e-25 118.2 127 52.0
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.3e-24 116.7 121 53.7
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 1.7e-24 116.3 94 59.6
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 2.2e-24 115.9 83 68.7
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 2.9e-24 115.5 82 68.3
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.6e-22 109.8 62 80.6
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 2.3e-21 105.9 100 55.0
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 1.9e-20 102.8 60 75.0
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.3e-20 102.1 85 61.2
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.3e-20 101.7 92 56.5
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 7.4e-20 100.9 69 66.7
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 1.1e-15 87.0 78 60.3
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 2.1e-14 82.8 61 59.0
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 2.5e-12 75.9 104 45.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.2e-09 67.0 109 37.6
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 1.5e-09 66.6 91 36.3
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 5.9e-09 64.7 111 35.1
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 1.7e-08 63.2 43 62.8
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.9e-08 62.4 39 69.2


User provided reference genes

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