Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 3.7e-233 811.2 424 100.0
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 8.9e-195 683.7 428 81.3
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 2.6e-194 682.2 426 81.9
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.3e-193 679.9 427 81.0
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 6.7e-166 587.8 424 72.2
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 2.2e-161 572.8 397 72.0
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 2.9e-161 572.4 396 73.5
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 3.2e-160 568.9 423 69.3
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 7.1e-160 567.8 412 69.9
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.2e-159 567.0 423 69.3
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.2e-159 567.0 376 74.7
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 1.6e-159 566.6 415 70.6
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 2.1e-159 566.2 419 70.6
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 6.0e-159 564.7 425 68.0
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 1.0e-158 563.9 400 70.2
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.8e-158 563.1 415 69.6
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 1.8e-158 563.1 416 66.8
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 3.0e-158 562.4 376 73.7
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 3.0e-158 562.4 378 72.8
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.3e-157 558.9 415 70.1
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 5.6e-157 558.1 435 66.2
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 7.4e-157 557.8 415 69.9
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 2.1e-156 556.2 404 70.3
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 2.1e-156 556.2 405 69.1
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 8.2e-156 554.3 420 68.6
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 8.2e-156 554.3 419 68.5
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 1.4e-155 553.5 379 72.0
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 4.0e-155 552.0 414 70.8
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.2e-154 550.4 407 71.3
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 1.2e-154 550.4 377 71.9
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 1.5e-154 550.1 369 74.5
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 1.5e-154 550.1 414 66.2
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 2.6e-154 549.3 425 67.3
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 3.4e-154 548.9 415 70.4
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 5.8e-154 548.1 379 72.6
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 1.7e-153 546.6 419 67.8
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 3.8e-153 545.4 410 69.5
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 3.8e-153 545.4 391 69.6
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 4.9e-153 545.0 418 69.1
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 4.2e-152 542.0 428 65.7
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 1.6e-151 540.0 415 65.5
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.7e-151 539.3 422 68.5
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 2.7e-151 539.3 378 71.2
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 3.5e-151 538.9 376 71.5
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 3.5e-151 538.9 383 70.2
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 3.5e-151 538.9 407 66.8
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 4.6e-151 538.5 413 67.3
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 6.0e-151 538.1 411 67.2
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 6.0e-151 538.1 385 69.6
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 7.9e-151 537.7 415 65.3
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 1.0e-150 537.3 372 72.6
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 1.3e-150 537.0 377 71.6
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.8e-150 536.6 424 65.6
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 3.0e-150 535.8 412 66.7
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 3.0e-150 535.8 372 71.2
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 3.9e-150 535.4 382 68.1
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 5.1e-150 535.0 406 67.2
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 8.7e-150 534.3 404 68.6
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.1e-149 533.9 365 73.4
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 4.3e-149 531.9 398 67.3
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.4e-149 531.2 375 70.1
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 7.4e-149 531.2 412 66.5
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 7.4e-149 531.2 412 66.5
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 1.3e-148 530.4 407 66.6
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.6e-148 530.0 424 66.7
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 2.2e-148 529.6 407 65.8
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 4.8e-148 528.5 402 67.7
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 4.8e-148 528.5 404 65.8
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 6.3e-148 528.1 405 66.7
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 1.4e-147 526.9 392 68.4
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 4.1e-147 525.4 465 60.4
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 6.9e-147 524.6 380 71.6
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 2.0e-146 523.1 406 66.7
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.0e-146 523.1 386 68.1
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 3.4e-146 522.3 376 70.7
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 4.5e-146 521.9 384 67.4
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.0e-145 520.8 377 67.9
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 1.7e-145 520.0 415 65.1
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.7e-145 520.0 418 65.3
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-145 520.0 427 64.9
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-145 520.0 427 64.9
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 3.8e-145 518.8 437 62.5
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 1.1e-144 517.3 411 66.4
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 5.5e-144 515.0 416 65.4
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 2.7e-143 512.7 377 68.4
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 6.1e-143 511.5 355 71.8
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 2.3e-142 509.6 416 64.7
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.5e-141 506.9 382 65.7
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 3.3e-141 505.8 377 68.4
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 7.4e-141 504.6 377 68.4
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.7e-140 503.4 397 65.0
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 3.1e-139 499.2 375 69.1
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 9.1e-131 471.1 393 61.3
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 4.5e-130 468.8 378 63.5
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.3e-129 467.2 382 61.8
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 6.5e-129 464.9 447 58.6
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.7e-124 450.3 365 63.6
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.8e-121 439.1 374 60.7
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 7.2e-120 434.9 423 58.9
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 5.9e-114 415.2 374 56.1
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 2.9e-113 412.9 387 56.8
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.1e-112 411.0 402 54.5
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 7.2e-112 408.3 389 55.3
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 6.8e-110 401.7 394 52.5
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 1.3e-108 397.5 372 55.9
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 1.8e-107 393.7 398 54.3
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.9e-105 386.3 376 55.6
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.9e-104 383.6 388 50.5
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.3e-100 370.9 373 50.4
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 2.5e-96 356.7 285 66.0
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.1e-95 353.6 323 58.5
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 1.4e-91 340.9 274 61.3
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.2e-90 337.8 223 72.2
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 3.9e-89 332.8 388 48.5
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 6.2e-87 325.5 322 53.1
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 1.0e-81 308.1 391 43.0
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.6e-77 293.5 176 79.0
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.6e-77 293.5 176 79.0
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 5.6e-64 249.2 376 41.2
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 2.3e-57 227.3 168 64.9
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 9.6e-56 221.9 424 37.7
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 2.0e-45 187.6 120 75.0
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 2.4e-38 164.1 399 32.6
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.9e-36 156.4 138 60.1
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 8.4e-36 155.6 136 58.1
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.5e-35 152.9 147 58.5
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 1.1e-30 138.7 393 30.5
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 3.1e-30 137.1 80 77.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.1e-10 71.2 391 24.3
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.1e-10 69.7 73 53.4
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.1e-10 69.7 73 53.4
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 2.3e-09 67.8 69 53.6
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.8e-06 58.2 95 36.8
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 4.1e-06 57.0 326 24.5


User provided reference genes

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