Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 1.8e-182 642.5 328 100.0
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 1.2e-159 566.6 336 88.1
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 4.7e-159 564.7 336 86.6
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 6.8e-142 507.7 332 77.7
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 3.4e-141 505.4 328 78.4
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 7.5e-141 504.2 328 78.4
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 8.3e-140 500.7 324 77.5
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.1e-139 500.4 288 84.7
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 1.1e-139 500.4 329 75.1
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.1e-139 500.4 330 77.6
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 2.4e-139 499.2 337 76.3
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.4e-139 499.2 330 75.8
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 3.1e-139 498.8 335 76.7
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 9.2e-139 497.3 306 82.4
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 7.7e-138 494.2 327 76.1
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.7e-137 493.0 313 77.6
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 2.3e-137 492.7 340 75.0
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 2.9e-137 492.3 327 77.1
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 2.9e-137 492.3 328 75.0
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 6.6e-137 491.1 304 78.3
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 1.9e-136 489.6 310 78.7
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 3.3e-136 488.8 338 73.4
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 3.3e-136 488.8 328 77.4
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 1.6e-135 486.5 321 75.4
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 2.8e-135 485.7 317 76.7
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 3.6e-135 485.3 334 75.4
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 3.6e-135 485.3 322 76.4
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 3.6e-135 485.3 288 83.0
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 4.7e-135 485.0 317 77.6
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 4.7e-135 485.0 302 77.5
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 6.1e-135 484.6 302 77.5
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 8.0e-135 484.2 329 74.2
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.4e-134 483.4 328 75.3
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 1.4e-134 483.4 302 77.5
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.8e-134 483.0 332 74.4
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 2.3e-134 482.6 338 73.7
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 3.0e-134 482.3 342 71.3
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 3.0e-134 482.3 304 79.6
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 5.2e-134 481.5 320 74.7
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 5.2e-134 481.5 333 74.5
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 8.9e-134 480.7 326 75.2
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 8.9e-134 480.7 344 72.7
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.5e-133 479.9 297 80.5
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.5e-133 479.9 329 75.4
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.6e-133 479.2 331 74.0
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 3.4e-133 478.8 340 73.2
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 3.4e-133 478.8 316 77.2
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 4.4e-133 478.4 322 76.4
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 5.7e-133 478.0 319 74.9
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 7.5e-133 477.6 340 74.1
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 9.8e-133 477.2 330 75.2
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 9.8e-133 477.2 325 75.7
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.3e-132 476.9 281 83.6
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.3e-132 476.9 328 73.5
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 1.7e-132 476.5 289 79.9
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.7e-132 476.5 283 83.0
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.7e-132 476.5 333 74.5
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 2.2e-132 476.1 285 81.8
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 2.2e-132 476.1 286 80.8
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 2.2e-132 476.1 286 80.8
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 2.2e-132 476.1 313 75.7
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 2.2e-132 476.1 289 79.9
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 2.2e-132 476.1 289 81.0
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.9e-132 475.7 313 75.7
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 2.9e-132 475.7 305 77.4
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 2.9e-132 475.7 318 75.8
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 3.7e-132 475.3 331 71.9
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 3.7e-132 475.3 289 80.3
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 6.4e-132 474.6 313 75.4
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 1.4e-131 473.4 285 81.1
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 3.2e-131 472.2 278 82.4
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 3.2e-131 472.2 330 70.6
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 3.2e-131 472.2 279 82.8
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 5.4e-131 471.5 329 71.7
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.2e-130 470.3 323 74.0
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 2.0e-130 469.5 278 82.7
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.0e-130 469.5 323 73.7
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.0e-129 467.2 314 77.1
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 3.0e-129 465.7 290 77.9
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 6.6e-129 464.5 282 80.9
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 6.6e-129 464.5 324 73.1
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 1.9e-128 463.0 271 83.0
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 3.6e-127 458.8 278 79.9
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 8.9e-126 454.1 272 80.9
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 7.5e-125 451.1 272 80.1
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.1e-123 447.2 326 70.2
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.4e-123 446.8 325 71.4
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 2.4e-123 446.0 321 69.5
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.6e-122 443.4 322 70.8
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 7.8e-122 441.0 320 72.2
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.5e-120 436.0 262 80.9
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 2.5e-120 436.0 295 74.6
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 1.1e-115 420.6 339 63.7
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 2.8e-111 406.0 330 66.7
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 5.2e-110 401.7 273 74.4
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.7e-108 396.7 247 84.6
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.6e-106 390.2 211 89.6
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.6e-103 380.2 250 72.8
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 8.1e-103 377.9 234 78.2
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.9e-101 370.9 232 77.6
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.9e-99 366.7 235 74.5
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.0e-98 361.7 244 75.8
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 4.3e-96 355.5 267 65.2
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.8e-95 352.8 262 63.4
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.4e-94 349.7 245 73.9
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 7.6e-93 344.7 247 71.7
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.1e-91 340.9 253 71.5
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.2e-91 339.3 203 77.3
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 7.4e-88 328.2 199 80.4
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.1e-83 314.3 309 58.9
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 3.4e-77 292.7 263 54.0
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 4.3e-72 275.8 153 84.3
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 3.7e-71 272.7 214 68.2
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 2.2e-63 246.9 207 62.3
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.5e-56 224.2 159 71.1
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 1.6e-50 204.1 120 82.5
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 2.7e-50 203.4 167 64.1
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 8.8e-49 198.4 329 39.5
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 1.5e-48 197.6 332 39.5
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.7e-47 194.1 116 83.6
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 2.2e-47 193.7 118 79.7
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 7.0e-46 188.7 128 75.0
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.3e-44 184.5 224 46.0
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 8.8e-33 145.2 234 39.7
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 8.8e-33 145.2 335 33.7
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.4e-32 142.9 77 85.7
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.0e-28 131.7 63 98.4
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 4.2e-27 126.3 76 77.6
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.4e-25 121.3 73 75.3
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 2.3e-25 120.6 287 30.0
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 1.8e-22 110.9 125 55.2
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.4e-22 110.5 334 27.2
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.8e-18 97.1 107 47.7
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 9.8e-16 88.6 81 56.8
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.7e-15 87.8 77 58.4
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 1.7e-12 77.8 179 35.8
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 3.1e-09 67.0 43 69.8
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 4.9e-07 59.7 53 56.6
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 8.3e-07 58.9 46 58.7
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.9e-06 57.8 59 59.3


User provided reference genes

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