Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 2.4e-266 922.2 673 100.0
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 2.3e-245 852.4 673 94.1
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 3.0e-245 852.0 673 94.1
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 2.5e-239 832.4 680 93.1
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 7.2e-207 724.5 672 83.9
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 8.0e-206 721.1 675 83.7
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 3.5e-201 705.7 673 82.5
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 4.7e-198 695.3 670 82.5
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 6.1e-198 694.9 674 81.5
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.8e-197 693.3 670 82.1
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 1.2e-196 690.6 670 81.8
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 9.8e-196 687.6 672 81.8
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.3e-195 687.2 671 81.7
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 2.2e-195 686.4 678 80.8
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 4.9e-195 685.3 670 81.8
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.8e-194 683.3 674 80.3
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 5.4e-194 681.8 669 81.6
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 4.6e-193 678.7 670 81.2
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 2.3e-192 676.4 458 75.3
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 2.9e-192 676.0 671 80.8
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 5.0e-192 675.2 670 80.4
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 5.0e-192 675.2 669 80.1
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.1e-191 674.1 671 80.8
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.9e-191 673.3 673 81.9
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 2.5e-191 672.9 669 79.7
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 5.6e-191 671.8 671 80.2
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 1.0e-189 667.5 671 79.9
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 1.4e-189 667.2 676 78.8
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 1.8e-189 666.8 670 80.1
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 2.3e-189 666.4 670 79.4
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 3.1e-189 666.0 671 79.9
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 2.0e-188 663.3 674 79.4
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 4.4e-188 662.1 679 79.7
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 4.4e-188 662.1 685 78.7
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 5.8e-188 661.8 671 80.0
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.2e-187 659.8 686 78.7
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 2.9e-187 659.4 462 73.6
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 3.7e-187 659.1 667 81.1
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 6.4e-187 658.3 671 80.0
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 4.1e-186 655.6 672 79.2
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 7.0e-186 654.8 462 73.4
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 3.0e-184 649.4 673 78.2
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.0e-184 648.7 669 79.2
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 2.5e-183 646.4 673 78.3
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 3.3e-183 646.0 654 80.6
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 1.6e-182 643.7 672 77.5
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 8.1e-182 641.3 667 78.4
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.2e-181 638.6 459 72.8
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 3.7e-179 632.5 678 76.7
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 4.9e-179 632.1 665 77.7
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 2.4e-178 629.8 680 75.0
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 2.4e-178 629.8 674 77.9
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 3.2e-178 629.4 682 76.8
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 3.2e-178 629.4 678 76.3
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.6e-177 627.1 676 77.8
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 1.6e-177 627.1 652 75.3
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.0e-176 624.4 675 76.4
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.0e-176 622.9 672 78.3
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 5.1e-176 622.1 673 76.7
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 5.1e-176 622.1 689 76.2
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 1.5e-175 620.5 670 76.7
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.9e-175 620.2 673 76.7
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 2.5e-175 619.8 673 76.7
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 3.6e-174 615.9 679 76.9
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.1e-173 614.4 673 76.2
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.4e-173 614.0 673 76.2
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 2.3e-173 613.2 668 76.0
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 5.8e-172 608.6 462 69.3
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 4.1e-170 602.4 708 72.7
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 3.5e-169 599.4 666 77.0
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 7.8e-169 598.2 673 74.7
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 1.0e-168 597.8 474 67.3
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.0e-168 596.3 667 77.2
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.9e-167 593.6 667 76.5
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 5.6e-167 592.0 671 76.5
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.4e-165 587.4 673 75.2
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 8.9e-165 584.7 673 74.0
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 8.9e-165 584.7 670 75.2
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 1.5e-164 583.9 674 74.9
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 2.9e-163 579.7 674 75.4
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 4.2e-162 575.9 669 63.5
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 1.2e-161 574.3 670 74.2
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 4.6e-161 572.4 671 73.6
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 4.6e-161 572.4 616 77.8
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 4.6e-161 572.4 670 74.2
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 4.6e-161 572.4 571 84.8
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 1.3e-160 570.9 672 74.3
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 2.3e-160 570.1 670 73.7
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.3e-158 564.3 674 72.8
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 3.6e-158 562.8 463 65.0
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 3.6e-158 562.8 674 72.8
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.4e-157 560.8 460 64.1
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.7e-155 553.9 457 65.0
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 2.7e-153 546.6 602 62.3
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 3.5e-153 546.2 728 65.2
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.5e-151 540.8 612 72.9
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 5.6e-151 538.9 566 82.5
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 2.1e-150 537.0 464 64.2
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 4.0e-149 532.7 672 68.5
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 4.0e-149 532.7 588 53.6
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 5.8e-148 528.9 391 69.6
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 3.8e-147 526.2 452 61.1
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.1e-146 524.6 442 64.7
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 5.8e-140 502.3 573 78.7
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 4.8e-134 482.6 674 68.5
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.8e-126 456.8 356 68.8
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 5.0e-123 446.0 706 64.3
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 5.5e-122 442.6 464 52.6
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 7.2e-122 442.2 630 59.2
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 2.2e-118 430.6 692 63.2
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 6.5e-115 419.1 318 69.5
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.6e-108 397.1 292 74.0
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 4.5e-108 396.4 400 53.0
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 1.0e-104 385.2 279 70.3
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.4e-87 326.6 668 59.3
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 3.3e-82 310.5 579 56.0
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 5.0e-67 260.0 194 69.1
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 4.7e-65 253.4 233 62.7
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 1.4e-61 241.9 470 35.5
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 3.4e-55 220.7 149 75.2
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 4.9e-54 216.9 144 77.1
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 5.4e-53 213.4 475 31.2
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.7e-52 211.1 195 55.9
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 1.0e-51 209.1 278 50.4
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 1.3e-51 208.8 294 49.0
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.3e-51 208.0 143 72.7
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 1.6e-49 201.8 193 50.3
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 1.6e-49 201.8 524 29.4
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 9.3e-45 186.0 160 64.4
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.5e-39 168.7 130 62.3
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 1.4e-37 162.2 291 37.1
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 6.0e-36 156.8 147 52.4
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.0e-35 154.5 142 58.5
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 3.0e-35 154.5 116 69.0
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 2.4e-32 144.8 293 89.4
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 1.5e-23 115.5 290 35.9
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-19 102.4 66 71.2
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 2.3e-19 101.7 110 50.9
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.3e-18 97.4 75 58.7
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 9.6e-18 96.3 513 22.4
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-17 95.9 84 60.7
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.2e-14 85.1 58 63.8
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 1.4e-13 82.4 495 23.2
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 1.4e-13 82.4 53 79.2
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.5e-13 81.6 47 87.2
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 9.7e-10 69.7 179 31.3
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 4.8e-09 67.4 49 75.5
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.1e-08 66.2 51 70.6
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 2.0e-07 62.0 37 75.7
Zm00001eb086350 Zea mays HOM05D008576 ORTHO05D000385 2.2e-06 58.5 63 54.0
Zm00001eb239900 Zea mays HOM05D004632 ORTHO05D005556 6.5e-06 57.0 49 61.2


User provided reference genes

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