Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 1.9e-192 675.6 328 100.0
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 2.5e-173 612.1 328 90.2
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 9.1e-171 603.6 328 89.0
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 7.9e-167 590.5 328 86.9
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 1.8e-147 526.2 328 74.1
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 9.1e-147 523.9 328 74.7
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 5.9e-146 521.2 329 74.8
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 1.9e-144 516.2 328 72.6
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 9.4e-144 513.8 329 73.6
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 8.0e-143 510.8 328 72.6
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 1.8e-142 509.6 328 72.3
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 1.8e-142 509.6 329 72.0
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 8.8e-142 507.3 328 71.0
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 1.5e-141 506.5 328 72.9
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.0e-141 506.1 328 72.3
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 4.4e-141 505.0 326 73.0
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 5.7e-141 504.6 328 71.3
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 7.5e-141 504.2 326 73.0
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 9.8e-141 503.8 328 71.6
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 1.3e-140 503.4 329 72.6
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 2.8e-140 502.3 328 72.3
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 1.8e-139 499.6 329 72.6
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 2.4e-139 499.2 328 71.0
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 1.6e-138 496.5 329 70.8
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 1.7e-137 493.0 328 70.7
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 4.3e-136 488.4 328 70.1
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 5.6e-136 488.0 328 71.3
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 7.3e-136 487.6 327 69.7
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 9.5e-136 487.3 326 70.6
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 3.6e-135 485.3 327 68.2
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 4.7e-135 485.0 328 68.6
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 1.8e-134 483.0 328 69.2
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 8.9e-134 480.7 328 67.7
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 1.5e-133 479.9 326 69.6
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 1.5e-133 479.9 328 68.9
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.5e-133 479.9 328 69.2
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 5.7e-133 478.0 326 68.1
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 7.5e-133 477.6 328 68.0
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 1.3e-132 476.9 329 68.1
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 1.7e-132 476.5 329 69.3
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 1.4e-131 473.4 327 66.7
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 2.4e-131 472.6 328 67.4
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 3.2e-131 472.2 328 66.2
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 5.4e-131 471.5 326 68.1
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 5.4e-131 471.5 351 65.0
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 1.6e-130 469.9 328 67.1
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 2.7e-130 469.2 328 68.0
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.0e-129 467.2 327 66.1
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 1.3e-129 466.8 328 66.5
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 2.3e-129 466.1 338 66.6
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 2.3e-129 466.1 329 66.6
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 2.3e-129 466.1 328 66.5
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 3.9e-129 465.3 327 66.1
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 3.9e-129 465.3 328 67.1
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 5.0e-129 464.9 327 65.4
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 8.6e-129 464.2 328 65.9
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 2.5e-128 462.6 328 66.5
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 4.3e-128 461.8 324 65.7
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 9.5e-128 460.7 326 66.0
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 1.6e-127 459.9 325 65.2
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 1.6e-127 459.9 325 65.2
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 3.6e-127 458.8 326 64.7
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 4.7e-127 458.4 324 67.0
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 8.0e-127 457.6 325 64.9
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 8.0e-127 457.6 323 65.6
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 1.0e-126 457.2 328 64.9
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 3.1e-126 455.7 325 64.3
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 3.1e-126 455.7 325 64.6
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 6.8e-126 454.5 325 64.0
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 8.9e-126 454.1 326 62.3
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 1.2e-125 453.8 328 65.9
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 2.0e-125 453.0 325 64.0
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 2.0e-125 453.0 328 65.9
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 3.4e-125 452.2 324 64.2
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 3.4e-125 452.2 328 63.4
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 3.4e-125 452.2 328 66.2
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 5.8e-125 451.4 328 62.8
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 2.2e-124 449.5 326 63.5
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 8.3e-124 447.6 366 60.1
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.4e-123 446.0 325 63.4
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 9.2e-123 444.1 328 63.7
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 1.2e-122 443.7 329 62.9
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.2e-122 443.7 328 63.7
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 1.5e-120 436.8 282 72.3
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 4.3e-120 435.3 328 60.7
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 7.3e-120 434.5 328 61.3
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.1e-119 433.0 286 71.7
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.1e-119 433.0 286 71.7
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 1.8e-118 429.9 328 60.4
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 3.1e-118 429.1 286 71.0
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 9.2e-115 417.5 328 57.6
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 1.6e-114 416.8 323 60.1
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 1.6e-114 416.8 371 55.5
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 2.3e-113 412.9 285 69.5
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 2.3e-113 412.9 323 58.5
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 1.9e-112 409.8 276 67.8
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 1.5e-109 400.2 328 60.4
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 9.9e-109 397.5 328 57.3
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 1.1e-107 394.0 274 67.2
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 1.5e-104 383.6 285 62.8
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 3.1e-102 375.9 328 51.8
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 5.2e-102 375.2 280 62.5
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 1.5e-96 357.1 225 70.7
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 4.5e-93 345.5 324 51.5
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 2.4e-91 339.7 308 58.1
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 1.0e-89 334.3 202 75.7
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 7.1e-83 311.6 200 70.0
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 3.3e-80 302.8 201 66.2
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 3.3e-80 302.8 331 46.5
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 1.1e-75 287.7 322 43.8
Pp3c5_28960 Physcomitrium patens HOM05D005266 ORTHO05D006416 5.5e-75 285.4 315 44.4
AagrBONN_evm.TU.Sc2ySwM_344.5454 Anthoceros agrestis HOM05D005266 ORTHO05D006416 9.6e-72 274.6 312 43.9
SMO147G0195 Selaginella moellendorffii HOM05D005266 ORTHO05D006416 2.7e-66 256.5 319 41.7
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 1.1e-56 224.6 170 63.5
MD06G1116200 Malus domestica HOM05D005266 ORTHO05D006416 1.8e-54 217.2 202 54.5
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 3.3e-48 196.4 152 59.9
MD17G1262800 Malus domestica HOM05D005266 ORTHO05D006416 4.8e-39 166.0 111 68.5
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 1.0e-36 158.3 159 50.9
ATR0589G038 Amborella trichopoda HOM05D005266 ORTHO05D006416 5.5e-35 152.5 127 58.3
TPR.G25301 Trifolium pratense HOM05D005266 ORTHO05D006416 3.4e-32 143.3 115 60.9
TAR303G0001 Trochodendron aralioides HOM05D005266 ORTHO05D003403 6.5e-28 129.0 90 68.9
CBR_g26176 Chara braunii HOM05D005266 ORTHO05D006416 3.6e-26 123.2 186 36.6
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 5.2e-25 119.4 73 76.7
Thecc.02G222700 Theobroma cacao HOM05D005266 ORTHO05D006416 2.3e-20 104.0 173 34.1
MCO05G347 Micromonas commoda HOM05D005266 ORTHO05D006416 5.0e-20 102.8 362 26.5
FAN13G3269 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.1e-19 101.7 67 70.1
FAN18G1945 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.5e-19 100.5 67 71.6
TPR.G25299 Trifolium pratense HOM05D005266 ORTHO05D006416 9.5e-19 98.6 137 42.3
CDE08G0252 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 8.0e-18 95.5 97 49.5
Thecc.02G199200 Theobroma cacao HOM05D005266 ORTHO05D006416 3.7e-15 86.7 187 31.6
Hund07659 Selenicereus undatus HOM05D005266 ORTHO05D006416 1.2e-13 81.6 187 30.5
ATR0772G101 Amborella trichopoda HOM05D002410 ORTHO05D002805 5.0e-12 76.3 311 21.2
TPR.G32052 Trifolium pratense HOM05D000002 ORTHO05D000001 5.6e-11 72.8 155 34.8
Actinidia32704 Actinidia chinensis HOM05D002410 ORTHO05D002805 1.6e-10 71.2 317 22.4
Thecc.03G165000 Theobroma cacao HOM05D005266 ORTHO05D006416 2.8e-10 70.5 50 58.0
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 4.7e-10 69.7 188 26.6
Rhsim03G0018500 Rhododendron simsii HOM05D005266 ORTHO05D006416 1.4e-09 68.2 37 78.4
MBI01_g28590_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 3.4e-08 63.5 55 52.7
SMO164G0071 Selaginella moellendorffii HOM05D002410 ORTHO05D002805 5.8e-08 62.8 303 22.1
ATR0307G005 Amborella trichopoda HOM05D002410 ORTHO05D002805 9.8e-08 62.0 127 30.7
Ca_25319_v3 Cicer arietinum L. HOM05D002410 ORTHO05D002805 9.8e-08 62.0 127 30.7
MBI01_g05788_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 1.7e-07 61.2 49 55.1
Lsat_1_v5_gn_6_4801 Lactuca sativa HOM05D002410 ORTHO05D002805 2.2e-07 60.8 121 31.4
Atru.chr1.3501 Acer truncatum HOM05D002410 ORTHO05D002805 6.4e-07 59.3 99 35.4
MD17G1185700 Malus domestica HOM05D002410 ORTHO05D002805 6.4e-07 59.3 127 29.1
Oeu060491.1 Olea europaea HOM05D002410 ORTHO05D002805 6.4e-07 59.3 126 30.2
Psat2g012760 Pisum sativum HOM05D002410 ORTHO05D002805 8.3e-07 58.9 127 29.1
AUR62011187 Chenopodium quinoa HOM05D002410 ORTHO05D002805 1.4e-06 58.2 310 20.3
Psat5g278560 Pisum sativum HOM05D002410 ORTHO05D002805 1.4e-06 58.2 127 29.1
PGSC0003DMG400002531 Solanum tuberosum HOM05D002410 ORTHO05D002805 1.9e-06 57.8 306 23.2
Aa31sc300G30 Aethionema arabicum HOM05D002410 ORTHO05D002805 2.4e-06 57.4 127 28.3
Rhsim10G0147400 Rhododendron simsii HOM05D005266 ORTHO05D006416 2.4e-06 57.4 38 71.1
Rhsim12G0186300 Rhododendron simsii HOM05D005266 ORTHO05D006416 2.4e-06 57.4 38 68.4
Lj6g0021119 Lotus japonicus HOM05D002410 ORTHO05D002805 3.2e-06 57.0 310 19.4
TPR.G32243 Trifolium pratense HOM05D002410 ORTHO05D002805 3.2e-06 57.0 127 29.9
Ah.09g224590 Amaranthus hybridus HOM05D002410 ORTHO05D002805 4.1e-06 56.6 310 19.0
MD09G1205500 Malus domestica HOM05D002410 ORTHO05D002805 4.1e-06 56.6 99 32.3
Pp3c22_17920 Physcomitrium patens HOM05D002410 ORTHO05D002805 4.1e-06 56.6 306 21.2
Aa31LG5G6650 Aethionema arabicum HOM05D002410 ORTHO05D002805 5.4e-06 56.2 127 29.9
AUR62013298 Chenopodium quinoa HOM05D002410 ORTHO05D002805 5.4e-06 56.2 307 19.5
Hma1.2p1_0430F.1_g151510 Hydrangea macrophylla HOM05D002410 ORTHO05D002805 7.0e-06 55.8 127 29.1
THA.LOC104821058 Tarenaya hassleriana HOM05D002410 ORTHO05D002805 7.0e-06 55.8 127 28.3
DCAR_006712 Daucus carota HOM05D002410 ORTHO05D002805 9.2e-06 55.5 121 29.8
Hund08403 Selenicereus undatus HOM05D006468 ORTHO05D006908 9.2e-06 55.5 38 60.5
THA.LOC104802411 Tarenaya hassleriana HOM05D002410 ORTHO05D002805 9.2e-06 55.5 127 28.3
GSVIVG01014715001 Vitis vinifera HOM05D002410 ORTHO05D002805 9.2e-06 55.5 127 28.3


User provided reference genes

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