Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 1.0e-34 149.4 70 100.0
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 4.2e-17 90.9 63 61.9
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.2e-16 89.4 70 58.6
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 2.1e-16 88.6 70 58.6
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 2.1e-16 88.6 63 61.9
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 3.6e-16 87.8 67 56.7
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 4.7e-16 87.4 64 59.4
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 4.7e-16 87.4 63 60.3
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 6.1e-16 87.0 69 56.5
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 6.1e-16 87.0 69 58.0
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 6.1e-16 87.0 69 58.0
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 6.1e-16 87.0 63 60.3
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 6.1e-16 87.0 70 57.1
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 6.1e-16 87.0 71 57.7
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 8.0e-16 86.7 68 58.8
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 8.0e-16 86.7 71 57.7
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.0e-16 86.7 71 57.7
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.0e-16 86.7 71 57.7
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.0e-16 86.7 71 57.7
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.0e-16 86.7 71 57.7
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 8.0e-16 86.7 71 57.7
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 8.0e-16 86.7 63 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 1.0e-15 86.3 63 60.3
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 1.0e-15 86.3 63 60.3
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.4e-15 85.9 71 57.7
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 58.7
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 58.7
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 58.7
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 58.7
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.4e-15 85.9 64 57.8
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 1.4e-15 85.9 63 60.3
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 1.8e-15 85.5 63 60.3
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 1.8e-15 85.5 63 60.3
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 2.3e-15 85.1 63 58.7
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 2.3e-15 85.1 63 58.7
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 2.3e-15 85.1 63 58.7
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 2.3e-15 85.1 63 57.1
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 57.1
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 3.9e-15 84.3 63 58.7
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 5.2e-15 84.0 63 58.7
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 6.7e-15 83.6 71 56.3
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 6.7e-15 83.6 63 58.7
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 6.7e-15 83.6 63 58.7
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 6.7e-15 83.6 63 58.7
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 8.8e-15 83.2 63 58.7
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 8.8e-15 83.2 63 58.7
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 1.1e-14 82.8 63 58.7
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.1e-14 82.8 71 56.3
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.1e-14 82.8 71 56.3
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 1.1e-14 82.8 71 56.3
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 1.1e-14 82.8 63 58.7
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 1.1e-14 82.8 63 58.7
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 1.5e-14 82.4 68 57.4
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 1.5e-14 82.4 63 58.7
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.5e-14 82.4 63 58.7
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.5e-14 82.4 63 58.7
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 3.7e-13 77.8 79 49.4
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.7e-13 77.8 63 55.6
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.7e-13 77.8 63 55.6
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 4.8e-13 77.4 53 62.3
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 6.3e-13 77.0 63 55.6
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 6.3e-13 77.0 75 50.7
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.8e-12 75.5 63 55.6
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 7.7e-11 70.1 95 42.1
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 7.7e-11 70.1 61 47.5
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 5.5e-09 63.9 65 53.8
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 7.2e-09 63.5 115 33.0
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 7.2e-09 63.5 60 50.0
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 7.2e-09 63.5 119 32.8
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 1.4e-07 59.3 52 50.0
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 1.8e-07 58.9 51 51.0
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 1.8e-07 58.9 51 51.0
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.3e-07 58.5 51 51.0
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.2e-07 57.4 51 49.0
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.2e-07 57.4 51 49.0
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.7e-07 57.0 51 49.0
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 1.5e-06 55.8 42 59.5
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 1.5e-06 55.8 42 59.5


User provided reference genes

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