Gene: Sopen06g034730
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g034730
- Transcript Identifier Sopen06g034730.1
- Gene Type Coding gene
- Location Spenn-ch06 : 59763949-59765869 : positive
Gene Family Information
- ID HOM05D003831
- #Genes/#Species 181/93
- Phylogenetic origin
- ID ORTHO05D004440
- #Genes/#Species 180/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen06g034730.1
Descriptions
- Description Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10. | RNA polymerases N / 8 kDa subunit | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding | INVOLVED IN: transcription, DNA-dependent, transcription, regulation of transcription | LOCATED IN: cellular_component unknown | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8kDa subunit , RNA polymerases, subunit N, zinc binding site , Homeodomain-related | BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT1G11475 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT1G11475 |
| GO:0005665 | ISO | PLAZA Integrative Orthology | RNA polymerase II, core complex | AT1G11475 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.1.6.8 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 10 |