Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003716 Sechium edule HOM05D010941 ORTHO05D000412 1.7e-73 279.3 146 100.0
ClCG02G022070 Citrullus lanatus HOM05D010941 ORTHO05D000412 1.1e-54 216.9 146 78.1
CsaV3_6G014900 Cucumis sativus L. HOM05D010941 ORTHO05D000412 7.1e-51 204.1 145 72.4
MELO3C035176.2 Cucumis melo HOM05D010941 ORTHO05D000412 1.1e-43 180.3 125 73.6
Duzib170G0821 Durio zibethinus HOM05D000581 ORTHO05D000412 2.4e-30 136.0 150 51.3
Gorai.009G087000 Gossypium raimondii HOM05D000581 ORTHO05D000412 2.6e-29 132.5 150 51.3
QL01p013207 Quercus lobata HOM05D000581 ORTHO05D000412 5.5e-27 124.8 138 52.2
CiPaw.13G138400 Carya illinoinensis HOM05D000581 ORTHO05D000412 2.7e-26 122.5 140 51.4
Glyma.13G317900 Glycine max HOM05D000581 ORTHO05D000412 3.0e-25 119.0 143 46.9
PGR102G2836 Punica granatum HOM05D000581 ORTHO05D000412 1.5e-24 116.7 144 48.6
Gohir.D05G085200 Gossypium hirsutum HOM05D010941 ORTHO05D000412 5.9e-21 104.8 106 51.9
Phvul.005G125700 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 5.9e-21 104.8 143 44.8
Gohir.A05G082300 Gossypium hirsutum HOM05D010941 ORTHO05D000412 2.9e-20 102.4 106 50.9
Medtr2g085155 Medicago truncatula HOM05D010941 ORTHO05D000412 2.9e-20 102.4 168 38.1
Medtr2g086010 Medicago truncatula HOM05D010941 ORTHO05D000412 8.5e-20 100.9 144 37.5
Lalb_Chr24g0395251 Lupinus albus HOM05D000581 ORTHO05D000412 7.2e-19 97.8 127 41.7
Thecc.09G287400 Theobroma cacao HOM05D010941 ORTHO05D000412 9.4e-19 97.4 145 40.7
Cfa010058 Carpinus fangiana HOM05D000581 ORTHO05D000412 1.6e-18 96.7 111 53.2
VMungo1080G1526 Vigna mungo HOM05D000581 ORTHO05D000412 2.7e-18 95.9 148 40.5
Prupe.6G124800 Prunus persica HOM05D000581 ORTHO05D000412 1.0e-17 94.0 110 50.0
Lj3g0023809 Lotus japonicus HOM05D010941 ORTHO05D000412 6.7e-17 91.3 145 38.6
Duzib168G0145 Durio zibethinus HOM05D010941 ORTHO05D000412 8.8e-17 90.9 98 50.0
TPR.G23789 Trifolium pratense HOM05D010941 ORTHO05D000412 4.4e-16 88.6 122 40.2
Dinv29449 Davidia involucrata HOM05D000581 ORTHO05D000412 7.4e-16 87.8 131 42.0
GSVIVG01036181001 Vitis vinifera HOM05D010941 ORTHO05D000412 1.3e-15 87.0 107 44.9
Ciclev10029511m.g Citrus clementina HOM05D000581 ORTHO05D000412 2.8e-15 85.9 143 33.6
Gohir.D09G136500 Gossypium hirsutum HOM05D000581 ORTHO05D000412 8.2e-15 84.3 149 34.9
Gorai.006G156600 Gossypium raimondii HOM05D000581 ORTHO05D000412 1.1e-14 84.0 149 34.9
Duzib093G1459 Durio zibethinus HOM05D000581 ORTHO05D000412 1.4e-14 83.6 149 33.6
Sabra09G0112800 Salix brachista HOM05D000581 ORTHO05D000412 3.1e-14 82.4 115 43.5
Thecc.05G085200 Theobroma cacao HOM05D000581 ORTHO05D000412 3.1e-14 82.4 149 32.9
Manes.08G023500 Manihot esculenta HOM05D000581 ORTHO05D000412 1.6e-13 80.1 149 34.9
Duzib128G0312 Durio zibethinus HOM05D000581 ORTHO05D000412 2.6e-13 79.3 149 30.9
Manes.09G059100 Manihot esculenta HOM05D000581 ORTHO05D000412 2.9e-12 75.9 148 31.1
Dinv31661 Davidia involucrata HOM05D000581 ORTHO05D000412 3.8e-12 75.5 159 30.8
MBI17_g16875_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 5.0e-12 75.1 148 29.1
Ca_10080_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 5.5e-11 71.6 138 29.7
VMungo0720G0007 Vigna mungo HOM05D000581 ORTHO05D000412 5.5e-11 71.6 136 29.4
Psat6g148480 Pisum sativum HOM05D000581 ORTHO05D000412 7.2e-11 71.2 136 28.7
PGR004G2822 Punica granatum HOM05D000581 ORTHO05D000412 9.4e-11 70.9 132 28.8
RcHm_v2.0_Chr3g0472651 Rosa chinensis HOM05D018852 ORTHO05D000412 1.6e-10 70.1 147 30.6
Glyma.20G230800 Glycine max HOM05D000581 ORTHO05D000412 4.7e-10 68.6 136 27.2
TAR627G1138 Trochodendron aralioides HOM05D000581 ORTHO05D000412 4.7e-10 68.6 150 31.3
Cpa.g.sc84.120 Carica papaya HOM05D000581 ORTHO05D000412 6.1e-10 68.2 136 27.2
TAR362G1287 Trochodendron aralioides HOM05D000581 ORTHO05D000412 6.1e-10 68.2 136 28.7
Actinidia05735 Actinidia chinensis HOM05D000581 ORTHO05D000412 8.0e-10 67.8 136 27.2
FvH4_6g18230 Fragaria vesca HOM05D018852 ORTHO05D022587 8.0e-10 67.8 147 31.3
Manes.09G161800 Manihot esculenta HOM05D000581 ORTHO05D000412 8.0e-10 67.8 132 27.3
AagrBONN_evm.TU.Sc2ySwM_117.2310 Anthoceros agrestis HOM05D000581 ORTHO05D000412 1.0e-09 67.4 142 28.2
CDE08G0017 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.4e-09 67.0 148 29.7
Gohir.A09G138100 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.4e-09 67.0 110 35.5
CSS0026132 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 1.8e-09 66.6 138 28.3
Cpa.g.sc32.127 Carica papaya HOM05D000581 ORTHO05D000412 1.8e-09 66.6 86 46.5
CiPaw.14G102400 Carya illinoinensis HOM05D000581 ORTHO05D000412 1.8e-09 66.6 136 29.4
TAR365G0048 Trochodendron aralioides HOM05D000581 ORTHO05D000412 2.3e-09 66.2 136 27.9
Atru.chr2.525 Acer truncatum HOM05D000581 ORTHO05D000412 3.0e-09 65.9 141 27.0
Duzib177G0416 Durio zibethinus HOM05D000581 ORTHO05D000412 3.0e-09 65.9 136 27.9
Mapoly0091s0072 Marchantia polymorpha HOM05D000581 ORTHO05D000412 3.0e-09 65.9 136 28.7
CSS0034339 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 4.0e-09 65.5 135 26.7
PGR004G1693 Punica granatum HOM05D000581 ORTHO05D000412 4.0e-09 65.5 136 26.5
Aa31LG8G8190 Aethionema arabicum HOM05D000581 ORTHO05D000412 5.2e-09 65.1 141 27.7
Medtr1g082290 Medicago truncatula HOM05D000581 ORTHO05D000412 5.2e-09 65.1 129 27.1
Nitab4.5_0000059g0300 Nicotiana tabacum HOM05D000581 ORTHO05D000412 5.2e-09 65.1 130 26.2
Solyc12g036230.3 Solanum lycopersicum HOM05D010941 ORTHO05D000412 5.2e-09 65.1 143 30.1
Duzib151G0330 Durio zibethinus HOM05D000581 ORTHO05D000412 6.7e-09 64.7 132 27.3
QL01p013198 Quercus lobata HOM05D000581 ORTHO05D000412 6.7e-09 64.7 98 28.6
Rhsim07G0178400 Rhododendron simsii HOM05D000581 ORTHO05D000412 6.7e-09 64.7 136 25.7
CSS0047346 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 8.8e-09 64.3 136 27.2
Peaxi162Scf00095g00213 Petunia axillaris HOM05D000581 ORTHO05D000412 8.8e-09 64.3 130 25.4
Sopen12g016360 Solanum pennellii HOM05D010941 ORTHO05D000412 8.8e-09 64.3 143 30.1
CDE06G0806 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.2e-08 63.9 142 29.6
Gohir.D11G271200 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-08 63.5 141 26.2
Gorai.007G291700 Gossypium raimondii HOM05D000581 ORTHO05D000412 1.5e-08 63.5 141 26.2
Sc16g0008270 Simmondsia chinensis HOM05D000581 ORTHO05D000412 1.5e-08 63.5 136 28.7
Gohir.D13G178400 Gossypium hirsutum HOM05D000581 ORTHO05D000412 2.0e-08 63.2 141 29.1
Gorai.013G203600 Gossypium raimondii HOM05D000581 ORTHO05D000412 2.0e-08 63.2 141 29.1
RcHm_v2.0_Chr3g0453481 Rosa chinensis HOM05D000581 ORTHO05D000412 2.0e-08 63.2 130 27.7
Thecc.04G273700 Theobroma cacao HOM05D000581 ORTHO05D000412 2.0e-08 63.2 132 27.3
GSVIVG01022018001 Vitis vinifera HOM05D000581 ORTHO05D000412 2.0e-08 63.2 136 25.7
Aqoxy2G03173 Aquilegia oxysepala HOM05D000581 ORTHO05D000412 2.6e-08 62.8 130 24.6
COL.COLO4_19933 Corchorus olitorius HOM05D010941 ORTHO05D000412 2.6e-08 62.8 106 38.7
TAR623G0761 Trochodendron aralioides HOM05D000581 ORTHO05D000412 2.6e-08 62.8 101 32.7
GSVIVG01017840001 Vitis vinifera HOM05D000581 ORTHO05D000412 2.6e-08 62.8 130 26.9
Atru.chr1.2688 Acer truncatum HOM05D000581 ORTHO05D000412 4.4e-08 62.0 132 26.5
Ciclev10002761m.g Citrus clementina HOM05D000581 ORTHO05D000412 4.4e-08 62.0 132 27.3
Gohir.A13G172600 Gossypium hirsutum HOM05D000581 ORTHO05D000412 4.4e-08 62.0 141 29.1
Nitab4.5_0003058g0010 Nicotiana tabacum HOM05D000581 ORTHO05D000412 4.4e-08 62.0 136 25.7
Potri.004G185900 Populus trichocarpa HOM05D000581 ORTHO05D000412 4.4e-08 62.0 135 30.4
Atru.chr1.1836 Acer truncatum HOM05D000581 ORTHO05D000412 5.7e-08 61.6 132 26.5
Thhalv10021689m.g Eutrema salsugineum HOM05D000581 ORTHO05D000412 5.7e-08 61.6 141 26.2
HanXRQChr04g0112931 Helianthus annuus HOM05D000581 ORTHO05D000412 5.7e-08 61.6 131 25.2
MSTRG.3966 Avicennia marina HOM05D000581 ORTHO05D000412 7.5e-08 61.2 130 26.2
Cpa.g.sc16.84 Carica papaya HOM05D000581 ORTHO05D000412 7.5e-08 61.2 132 26.5
CiPaw.08G168000 Carya illinoinensis HOM05D000581 ORTHO05D000412 7.5e-08 61.2 142 26.1
Lj6g0021208 Lotus japonicus HOM05D000373 ORTHO05D001146 7.5e-08 61.2 130 26.9
Hma1.2p1_0643F.1_g194570 Hydrangea macrophylla HOM05D000581 ORTHO05D000412 9.7e-08 60.8 130 25.4
Sopen06g035800 Solanum pennellii HOM05D000581 ORTHO05D000412 9.7e-08 60.8 137 25.5
TWI73G0342 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 9.7e-08 60.8 141 26.2
BcaB04g20584 Brassica carinata HOM05D000581 ORTHO05D000412 1.3e-07 60.5 141 25.5
AL3G35620 Arabidopsis lyrata HOM05D000581 ORTHO05D000412 1.7e-07 60.1 141 26.2
AT3G21510 Arabidopsis thaliana HOM05D000581 ORTHO05D000412 1.7e-07 60.1 132 26.5
Carub.0003s2155 Capsella rubella HOM05D000581 ORTHO05D000412 1.7e-07 60.1 141 26.2
CARHR097440 Cardamine hirsuta HOM05D000581 ORTHO05D000412 1.7e-07 60.1 141 26.2
Eucgr.B01218 Eucalyptus grandis HOM05D000581 ORTHO05D000412 1.7e-07 60.1 132 26.5
Manes.15G019500 Manihot esculenta HOM05D000581 ORTHO05D000412 1.7e-07 60.1 130 24.6
SEGI_16835 Sequoiadendron giganteum HOM05D000581 ORTHO05D000412 1.7e-07 60.1 130 26.2
PGSC0003DMG401020117 Solanum tuberosum HOM05D000581 ORTHO05D000412 1.7e-07 60.1 136 24.3
Cc03_g02630 Coffea canephora HOM05D000581 ORTHO05D000412 2.2e-07 59.7 130 24.6
Haze_23427 Corylus avellana HOM05D000581 ORTHO05D000412 2.2e-07 59.7 141 26.2
Dinv38343 Davidia involucrata HOM05D000581 ORTHO05D000412 2.2e-07 59.7 130 24.6
Lj6C666T4 Lonicera japonica HOM05D000581 ORTHO05D000412 2.2e-07 59.7 130 28.5
PGR031G1202 Punica granatum HOM05D000581 ORTHO05D000412 2.2e-07 59.7 136 26.5
Actinidia30898 Actinidia chinensis HOM05D000581 ORTHO05D000412 2.8e-07 59.3 136 26.5
Gohir.A11G260800 Gossypium hirsutum HOM05D000581 ORTHO05D000412 2.8e-07 59.3 141 25.5
Sp3g19550 Schrenkiella parvula HOM05D000581 ORTHO05D000412 2.8e-07 59.3 141 25.5
CSS0039077 Camellia sinensis var. sinensis HOM05D010941 ORTHO05D000412 3.7e-07 58.9 83 47.0
FAN05G4004 Fragaria x ananassa HOM05D000581 ORTHO05D000412 3.7e-07 58.9 141 26.2
Manes.03G189000 Manihot esculenta HOM05D000581 ORTHO05D000412 3.7e-07 58.9 130 24.6
Psat1g186240 Pisum sativum HOM05D000581 ORTHO05D000412 3.7e-07 58.9 130 26.2
Potri.013G028300 Populus trichocarpa HOM05D000581 ORTHO05D000412 3.7e-07 58.9 136 24.3
GSVIVG01034756001 Vitis vinifera HOM05D000581 ORTHO05D000412 3.7e-07 58.9 132 31.1
FAN05G4728 Fragaria x ananassa HOM05D000581 ORTHO05D000412 4.8e-07 58.5 141 26.2
Lsat_1_v5_gn_9_44680 Lactuca sativa HOM05D000581 ORTHO05D000412 4.8e-07 58.5 141 24.8
SMO347G0088 Selaginella moellendorffii HOM05D000581 ORTHO05D000412 4.8e-07 58.5 138 25.4
Gohir.A09G232600 Gossypium hirsutum HOM05D000581 ORTHO05D000412 6.3e-07 58.2 141 27.0
Phvul.006G159300 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 6.3e-07 58.2 130 26.2
BcaC09g49088 Brassica carinata HOM05D000581 ORTHO05D000412 8.2e-07 57.8 141 24.8
CSS0031946 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 8.2e-07 57.8 130 26.2
Dinv11276 Davidia involucrata HOM05D000581 ORTHO05D000412 8.2e-07 57.8 130 23.1
Duzib170G0963 Durio zibethinus HOM05D000581 ORTHO05D000412 8.2e-07 57.8 131 26.0
HanXRQChr11g0321011 Helianthus annuus HOM05D000581 ORTHO05D000412 8.2e-07 57.8 131 24.4
Lj3A807T52 Lonicera japonica HOM05D000581 ORTHO05D000412 8.2e-07 57.8 130 24.6
PSO210G5583 Papaver somniferum HOM05D000581 ORTHO05D000412 8.2e-07 57.8 138 24.6
PSO832G2860 Papaver somniferum HOM05D000581 ORTHO05D000412 8.2e-07 57.8 138 24.6
Zm00001eb096040 Zea mays HOM05D000581 ORTHO05D000412 8.2e-07 57.8 141 25.5
A01p33390 Brassica napus HOM05D000581 ORTHO05D000412 1.1e-06 57.4 141 24.8
C01p42660 Brassica napus HOM05D000581 ORTHO05D000412 1.1e-06 57.4 132 25.0
BolC1t04222H Brassica oleracea HOM05D000581 ORTHO05D000412 1.1e-06 57.4 132 25.0
BraA01t03461Z Brassica rapa HOM05D000581 ORTHO05D000412 1.1e-06 57.4 141 24.8
Glyma.15G099800 Glycine max HOM05D000581 ORTHO05D000412 1.1e-06 57.4 130 26.2
Prupe.1G145400 Prunus persica HOM05D000581 ORTHO05D000412 1.1e-06 57.4 130 26.2
Cpa.g.sc728.2 Carica papaya HOM05D000581 ORTHO05D000412 1.4e-06 57.0 131 23.7
Cfa016574 Carpinus fangiana HOM05D000581 ORTHO05D000412 1.4e-06 57.0 96 31.2
ECA247G2450 Erigeron canadensis HOM05D000581 ORTHO05D000412 1.4e-06 57.0 131 23.7
Gohir.D09G233700 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.4e-06 57.0 141 26.2
MD16G1178100 Malus domestica HOM05D000581 ORTHO05D000412 1.4e-06 57.0 131 26.7
VMungo0540G1727 Vigna mungo HOM05D000581 ORTHO05D000412 1.8e-06 56.6 130 25.4
Medtr2g020770 Medicago truncatula HOM05D000581 ORTHO05D000412 2.4e-06 56.2 130 23.8
Gorai.006G256600 Gossypium raimondii HOM05D000581 ORTHO05D000412 3.1e-06 55.8 141 26.2
Os09g0567400 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 3.1e-06 55.8 150 24.0
Ciclev10021954m.g Citrus clementina HOM05D000581 ORTHO05D000412 4.1e-06 55.5 135 25.9
HanXRQChr02g0058621 Helianthus annuus HOM05D000581 ORTHO05D000412 4.1e-06 55.5 120 24.2
TPR.G18038 Trifolium pratense HOM05D000581 ORTHO05D000412 4.1e-06 55.5 129 27.1
Actinidia00719 Actinidia chinensis HOM05D000581 ORTHO05D000412 7.0e-06 54.7 130 22.3
Aqoxy5G00588 Aquilegia oxysepala HOM05D000581 ORTHO05D000412 7.0e-06 54.7 129 22.5


User provided reference genes

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