Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 0.0e+00 1625.9 804 100.0
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 0.0e+00 1312.0 793 81.8
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 0.0e+00 1192.9 795 75.2
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 0.0e+00 1154.0 794 73.3
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 4.3e-214 748.8 791 49.4
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.4e-211 739.2 790 48.7
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 4.1e-209 732.3 786 49.7
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 3.0e-207 726.1 783 49.8
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.2e-205 720.7 783 49.2
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 2.8e-205 719.5 786 49.5
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.2e-204 715.3 784 48.7
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.9e-201 706.8 807 47.6
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 2.4e-201 706.4 788 47.7
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.1e-200 703.4 785 48.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 3.5e-200 702.6 785 47.6
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.0e-199 701.0 779 46.7
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.5e-198 696.4 801 47.8
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 5.6e-198 695.3 781 49.0
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 9.6e-198 694.5 792 47.1
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.8e-196 690.3 786 47.5
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 8.4e-194 681.4 787 46.5
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.1e-193 681.0 782 47.6
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.2e-192 677.6 801 46.8
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 6.0e-192 675.2 787 47.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 5.1e-191 672.2 788 46.8
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 8.7e-191 671.4 784 46.6
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.9e-190 670.2 784 46.6
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-189 666.4 784 46.7
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 9.0e-188 661.4 786 44.9
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.6e-187 659.8 786 44.7
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 5.4e-185 652.1 784 45.9
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.5e-182 644.0 817 43.6
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 5.6e-182 642.1 812 45.1
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 7.4e-182 641.7 780 44.5
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 7.4e-182 641.7 780 44.5
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.3e-181 641.0 795 44.5
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 6.2e-181 638.6 822 43.3
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.1e-180 637.9 791 45.6
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 3.1e-180 636.3 813 45.1
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 7.9e-176 621.7 799 43.9
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.9e-174 617.1 814 43.7
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 2.1e-173 613.6 824 43.7
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.3e-172 609.0 832 41.5
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 9.0e-172 608.2 812 44.1
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 3.4e-171 606.3 794 43.7
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 5.8e-171 605.5 812 43.8
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.0e-170 604.7 808 43.2
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 3.8e-170 602.8 789 44.0
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 8.4e-170 601.7 785 43.2
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 8.4e-170 601.7 787 44.0
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 8.4e-170 601.7 734 45.1
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.9e-169 600.5 698 47.0
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 7.1e-169 598.6 785 43.1
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 9.3e-169 598.2 814 41.6
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.6e-168 597.4 824 41.5
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.8e-167 594.0 792 42.7
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 3.0e-167 593.2 787 41.7
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 8.7e-167 591.7 786 42.7
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 7.4e-166 588.6 784 42.3
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.6e-165 587.4 806 42.4
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.8e-165 586.6 781 42.5
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 4.8e-165 585.9 786 42.5
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 8.2e-165 585.1 792 41.5
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 8.2e-165 585.1 788 41.4
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.8e-164 583.9 822 40.9
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 3.1e-164 583.2 836 41.4
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 6.9e-164 582.0 787 40.9
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 3.4e-163 579.7 798 43.5
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 5.9e-163 578.9 778 42.4
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.0e-162 578.2 784 41.7
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 1.1e-161 574.7 785 41.0
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.4e-161 574.3 780 42.7
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.5e-161 573.5 805 41.6
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 4.2e-161 572.8 789 41.6
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.2e-160 571.2 784 42.5
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.2e-160 571.2 784 42.5
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.7e-160 570.1 665 46.3
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 6.1e-160 568.9 792 41.2
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.8e-159 567.4 801 42.7
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.8e-159 567.4 788 40.9
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 8.8e-159 565.1 777 42.1
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 5.7e-158 562.4 786 40.3
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.8e-157 560.1 799 40.8
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 4.8e-157 559.3 806 40.3
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 9.1e-156 555.1 784 40.1
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 9.1e-156 555.1 785 40.4
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.2e-155 554.7 785 41.1
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.2e-155 554.7 784 41.1
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.6e-155 553.5 818 40.3
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.0e-154 551.6 844 40.5
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.2e-154 550.4 800 40.1
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.2e-154 550.4 800 40.1
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 2.5e-153 547.0 788 42.3
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.7e-149 533.1 614 47.2
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 6.3e-149 532.3 652 44.9
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.1e-148 531.6 882 39.1
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 2.6e-147 526.9 851 37.6
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.7e-146 524.2 794 38.7
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 6.7e-143 512.3 798 39.2
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.0e-142 510.8 771 40.7
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.0e-134 484.2 669 41.0
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 2.2e-133 480.7 781 37.4
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 6.3e-133 479.2 782 38.6
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.2e-131 474.9 808 35.6
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.6e-131 474.6 662 42.1
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.0e-131 474.2 556 47.5
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 5.0e-130 469.5 784 37.2
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 6.8e-127 459.1 534 46.6
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 3.6e-120 436.8 636 37.9
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.2e-116 423.7 553 43.6
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 2.1e-112 411.0 559 43.1
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 6.2e-104 382.9 492 44.5
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.8e-103 381.3 693 37.8
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 2.6e-102 377.5 572 38.8
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 8.3e-101 372.5 616 35.6
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.0e-86 324.7 662 34.4
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.6e-86 324.3 493 40.4
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 4.2e-84 317.0 290 55.2
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 2.7e-83 314.3 551 35.2
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.6e-80 305.1 482 37.8
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.0e-74 285.8 327 47.4
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 5.1e-74 283.5 827 29.6
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 3.3e-73 280.8 502 35.1
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.8e-72 277.7 306 46.1
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 5.3e-71 273.5 586 32.3
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.8e-66 258.5 484 36.0
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.3e-66 258.1 528 33.1
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.9e-60 238.4 633 28.3
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.2e-60 237.3 202 59.4
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 3.8e-53 214.2 171 66.1
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 9.3e-52 209.5 581 28.4
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 1.8e-50 205.3 333 38.7
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.1e-47 194.5 201 51.7
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 4.5e-46 190.7 169 57.4
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.2e-43 182.6 174 54.0
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 6.7e-42 176.8 154 63.0
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 5.7e-41 173.7 251 39.8
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 5.1e-34 150.6 180 46.7
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.6e-30 138.3 235 35.3
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 2.6e-30 138.3 206 38.3
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 4.5e-30 137.5 280 31.4
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 7.7e-30 136.7 145 52.4
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 9.4e-28 129.8 128 56.2
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 9.4e-28 129.8 145 51.0
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 9.4e-28 129.8 270 32.6
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 2.7e-27 128.3 146 51.4
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 5.7e-25 120.6 108 50.0
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 1.0e-21 109.8 68 70.6
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.9e-21 108.2 134 47.0
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 3.8e-21 107.8 113 46.0
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 6.5e-21 107.1 246 28.9
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 8.5e-21 106.7 134 47.8
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.9e-20 105.5 135 47.4
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 1.2e-19 102.8 100 51.0
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 8.0e-19 100.1 99 53.5
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 8.3e-16 90.1 94 42.6
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 3.1e-15 88.2 148 38.5
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 1.2e-14 86.3 174 33.3
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.5e-12 79.3 262 29.0
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 5.2e-10 70.9 58 48.3
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 6.8e-10 70.5 141 32.6
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 6.8e-10 70.5 55 49.1
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 9.8e-09 66.6 56 57.1
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.1e-07 63.2 49 59.2
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.4e-07 62.0 69 46.4
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 5.4e-07 60.8 47 55.3
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.6e-06 59.3 34 67.6
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.6e-06 59.3 63 46.0
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 2.0e-06 58.9 56 55.4
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.9e-06 57.4 29 75.9


User provided reference genes

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