Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 5.9e-57 224.2 129 100.0
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 9.4e-55 216.9 129 96.1
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 9.4e-55 216.9 129 96.1
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 1.7e-51 206.1 129 91.5
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 2.2e-51 205.7 129 91.5
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 1.2e-49 199.9 129 88.4
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.6e-49 199.5 129 88.4
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 1.6e-49 199.5 129 88.4
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 1.6e-49 199.5 129 88.4
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.6e-49 199.5 129 87.6
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 3.5e-49 198.4 129 87.6
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 3.5e-49 198.4 129 88.4
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 3.5e-49 198.4 129 86.8
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 4.5e-49 198.0 129 86.8
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 4.5e-49 198.0 129 86.8
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 4.5e-49 198.0 129 86.8
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 1.7e-48 196.1 129 86.0
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.7e-48 196.1 129 86.8
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 1.7e-48 196.1 129 86.0
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 2.2e-48 195.7 129 85.3
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 2.9e-48 195.3 130 87.7
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 6.5e-48 194.1 129 86.8
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 6.5e-48 194.1 127 86.6
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 6.5e-48 194.1 129 86.0
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 6.5e-48 194.1 128 85.9
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 1.5e-47 193.0 133 85.7
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.9e-47 192.6 132 85.6
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 3.2e-47 191.8 129 84.5
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 3.2e-47 191.8 130 85.4
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 3.2e-47 191.8 129 84.5
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.2e-47 191.8 131 86.3
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 4.2e-47 191.4 129 86.0
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 5.5e-47 191.0 127 85.0
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 7.2e-47 190.7 133 84.2
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.2e-46 189.9 129 82.9
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 1.6e-46 189.5 133 82.7
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 2.1e-46 189.1 129 85.3
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 2.7e-46 188.7 129 85.3
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.6e-46 188.3 150 76.0
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 4.7e-46 188.0 130 84.6
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 8.0e-46 187.2 132 84.8
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 8.0e-46 187.2 129 84.5
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 83.7
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.0e-45 186.8 130 84.6
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 1.8e-45 186.0 132 84.1
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 2.3e-45 185.7 131 84.7
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 3.0e-45 185.3 127 81.1
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 5.2e-45 184.5 132 83.3
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 5.2e-45 184.5 129 82.9
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 5.2e-45 184.5 128 84.4
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 5.2e-45 184.5 132 83.3
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 6.7e-45 184.1 126 81.7
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 8.8e-45 183.7 133 82.7
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.2e-44 183.3 129 82.2
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.2e-44 183.3 129 80.6
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.5e-44 183.0 129 79.8
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.5e-44 183.0 129 79.8
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 2.0e-44 182.6 129 82.2
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 2.6e-44 182.2 129 82.2
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 2.6e-44 182.2 132 81.8
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 3.3e-44 181.8 129 82.9
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 3.3e-44 181.8 127 80.3
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 3.3e-44 181.8 161 70.2
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.4e-44 181.4 117 88.0
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 5.7e-44 181.0 129 83.7
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 7.5e-44 180.6 116 88.8
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 1.7e-43 179.5 132 81.1
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 1.7e-43 179.5 128 81.2
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.7e-43 178.3 129 80.6
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 8.2e-43 177.2 130 82.3
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 1.4e-42 176.4 116 87.1
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 1.8e-42 176.0 121 84.3
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 2.4e-42 175.6 129 81.4
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 7.0e-42 174.1 120 84.2
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.2e-41 173.3 116 86.2
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.0e-41 172.6 119 85.7
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 2.7e-41 172.2 129 79.1
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 4.5e-41 171.4 122 81.1
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 4.5e-41 171.4 116 83.6
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 5.9e-41 171.0 121 81.0
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 5.9e-41 171.0 122 80.3
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 5.9e-41 171.0 116 85.3
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 7.7e-41 170.6 116 84.5
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 2.2e-40 169.1 130 80.0
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 2.9e-40 168.7 114 85.1
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 2.9e-40 168.7 116 84.5
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 2.9e-40 168.7 117 85.5
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 5.0e-40 167.9 126 77.8
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 6.5e-40 167.5 128 78.1
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 4.2e-39 164.9 129 76.0
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 2.7e-38 162.2 116 82.8
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 2.7e-38 162.2 129 76.0
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 3.6e-38 161.8 133 75.9
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 8.0e-38 160.6 126 76.2
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.0e-37 160.2 152 67.1
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.4e-37 159.8 112 82.1
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.0e-37 158.3 131 76.3
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.0e-37 158.3 131 76.3
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 6.8e-37 157.5 132 75.0
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.5e-36 156.4 130 76.2
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 1.5e-36 156.4 129 76.0
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 2.0e-36 156.0 112 83.0
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 3.7e-35 151.8 132 74.2
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 3.7e-35 151.8 116 79.3
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 8.3e-35 150.6 132 73.5
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 9.1e-34 147.1 128 69.5
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.7e-33 145.6 132 71.2
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.0e-32 143.7 128 69.5
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 2.5e-31 139.0 119 74.8
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 2.5e-31 139.0 129 68.2
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 9.5e-31 137.1 132 68.2
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 2.1e-30 136.0 110 73.6
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 2.8e-30 135.6 114 71.9
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 1.4e-29 133.3 129 66.7
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.2e-28 130.2 95 78.9
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 7.5e-28 127.5 94 76.6
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 1.3e-27 126.7 131 63.4
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 2.2e-27 125.9 82 87.8
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 2.8e-27 125.6 142 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 5.4e-26 121.3 80 82.5
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 1.2e-25 120.2 128 63.3
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.6e-25 119.8 134 60.4
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 2.7e-25 119.0 86 80.2
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.7e-25 119.0 83 83.1
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 2.3e-24 115.9 125 60.8
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 5.0e-24 114.8 68 92.6
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 5.6e-23 111.3 66 92.4
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.0e-21 107.1 136 56.6
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.2e-20 103.6 70 82.9
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 3.7e-19 98.6 68 80.9
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 2.4e-18 95.9 121 52.9
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 9.2e-18 94.0 270 34.1
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 7.8e-17 90.9 123 50.4
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.1e-15 87.0 58 82.8
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 1.9e-15 86.3 53 90.6
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 3.3e-15 85.5 60 80.0
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 4.3e-15 85.1 64 78.1
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 5.6e-15 84.7 54 87.0
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 1.4e-13 80.1 87 52.9
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 1.2e-12 77.0 61 70.5
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 3.4e-12 75.5 80 65.0
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 2.2e-11 72.8 110 46.4
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 6.6e-08 61.2 48 77.1
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.3e-07 58.9 40 80.0


User provided reference genes

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