Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 2.2e-117 425.6 218 100.0
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 5.4e-111 404.4 218 95.0
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.6e-110 402.9 218 94.0
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.6e-110 402.9 218 94.0
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 2.0e-110 402.5 218 94.0
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.2e-97 360.1 216 84.3
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 3.4e-97 358.6 216 82.9
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 7.5e-97 357.5 221 82.4
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 1.7e-96 356.3 220 82.3
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 83.2
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 4.9e-96 354.8 219 81.7
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 6.4e-96 354.4 219 81.7
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 8.3e-96 354.0 218 81.2
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 81.3
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.9e-95 352.8 219 81.3
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 2.4e-95 352.4 219 79.5
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.4e-95 352.4 218 83.0
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.2e-95 352.1 220 80.0
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 3.2e-95 352.1 218 81.7
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.1e-95 351.7 220 81.4
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 4.1e-95 351.7 221 81.9
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 5.4e-95 351.3 218 79.8
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 5.4e-95 351.3 219 80.4
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.6e-94 349.7 219 79.9
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 81.4
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.0e-94 349.4 220 80.0
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.0e-94 349.4 221 80.1
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.7e-94 349.0 218 80.3
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 4.6e-94 348.2 219 80.4
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 6.0e-94 347.8 214 82.7
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 6.0e-94 347.8 218 80.7
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 6.0e-94 347.8 221 79.6
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 6.0e-94 347.8 221 79.6
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 7.8e-94 347.4 219 79.9
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 7.8e-94 347.4 219 80.4
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 80.5
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 80.5
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.0e-93 347.1 219 79.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.0e-93 347.1 220 79.5
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 79.5
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.7e-93 346.3 221 78.7
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 81.4
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 2.3e-93 345.9 221 79.6
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 3.0e-93 345.5 218 79.4
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 3.0e-93 345.5 219 80.4
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 3.9e-93 345.1 218 79.8
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.0e-93 344.7 219 82.2
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.0e-93 344.7 220 78.6
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 6.6e-93 344.4 221 78.7
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 6.6e-93 344.4 216 78.2
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 6.6e-93 344.4 220 77.3
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 6.6e-93 344.4 232 78.0
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.6e-93 344.4 220 78.6
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 1.1e-92 343.6 216 79.2
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 81.7
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 82.2
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.5e-92 343.2 220 79.5
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 1.5e-92 343.2 220 79.5
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 1.5e-92 343.2 221 78.7
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.5e-92 343.2 221 78.7
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.5e-92 343.2 220 80.0
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 80.0
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 2.5e-92 342.4 220 79.5
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 2.5e-92 342.4 220 79.5
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 3.3e-92 342.0 219 79.5
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 3.3e-92 342.0 220 79.1
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 3.3e-92 342.0 217 80.2
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 4.3e-92 341.7 217 80.2
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 4.3e-92 341.7 220 77.7
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 4.3e-92 341.7 220 79.1
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 5.6e-92 341.3 220 78.6
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 5.6e-92 341.3 217 80.2
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 7.3e-92 340.9 219 80.8
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.3e-92 340.9 219 80.8
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 9.5e-92 340.5 220 78.6
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 9.5e-92 340.5 220 79.1
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 1.2e-91 340.1 219 78.1
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.6
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.6
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.6
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 76.8
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.8e-91 339.0 219 80.4
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.6
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 3.6e-91 338.6 220 77.7
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 6.2e-91 337.8 217 79.7
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 8.1e-91 337.4 220 76.8
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.4e-90 336.7 220 78.2
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.4e-90 336.7 216 78.7
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.8e-90 336.3 220 77.3
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.8e-90 336.3 218 77.5
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.3e-90 335.9 225 78.2
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.3e-90 335.9 217 78.3
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 2.3e-90 335.9 217 77.9
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 2.3e-90 335.9 223 78.9
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 4.0e-90 335.1 220 76.8
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 5.2e-90 334.7 220 77.7
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.2e-90 334.7 221 77.4
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 6.8e-90 334.3 221 75.6
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.2e-89 333.6 217 77.0
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.5e-89 333.2 220 76.4
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 2.0e-89 332.8 217 77.0
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 2.0e-89 332.8 224 77.2
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.0e-89 332.8 211 79.6
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 2.6e-89 332.4 220 75.9
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 3.4e-89 332.0 219 78.1
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 4.4e-89 331.6 217 76.5
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 4.4e-89 331.6 216 76.9
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 4.4e-89 331.6 216 76.9
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 7.5e-89 330.9 217 76.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 7.5e-89 330.9 216 77.8
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 9.8e-89 330.5 221 77.4
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.3e-88 330.1 221 76.9
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.2e-88 329.3 220 77.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 2.2e-88 329.3 216 77.8
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 2.9e-88 328.9 203 80.8
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.1e-87 327.0 217 76.0
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 7.1e-87 324.3 218 76.6
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.2e-86 323.6 219 76.7
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 4.3e-84 315.1 220 72.7
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.1e-82 310.5 218 72.5
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 3.8e-80 302.0 191 77.0
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 6.4e-80 301.2 165 86.1
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.7e-78 295.8 216 71.3
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 6.0e-78 294.7 224 69.6
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.4e-74 282.7 163 81.6
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.6e-73 279.3 193 74.6
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.2e-71 272.3 165 80.0
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 4.6e-70 268.5 202 67.8
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.3e-69 266.9 172 72.7
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.7e-69 266.5 222 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.1e-68 263.8 186 68.8
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.3e-68 262.3 207 65.7
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 2.7e-62 242.7 219 61.2
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 7.6e-57 224.6 218 56.0
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.2e-55 218.8 222 58.1
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.1e-51 206.5 220 55.0
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.3e-45 187.2 211 50.7
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 1.8e-45 186.8 171 55.0
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.3e-45 186.4 138 73.9
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 8.7e-45 184.5 150 58.0
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 1.3e-43 180.6 127 70.1
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.2e-25 120.9 107 69.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.2e-15 85.1 58 72.4
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 7.2e-15 85.1 58 72.4
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 2.5e-07 60.1 56 53.6


User provided reference genes

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