Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 7.4e-109 397.1 189 100.0
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 8.5e-105 383.6 189 96.3
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 8.5e-105 383.6 189 96.3
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 8.5e-105 383.6 189 96.3
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 6.1e-103 377.5 189 95.2
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.3e-102 375.6 189 93.1
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 5.2e-102 374.4 188 93.1
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 5.2e-102 374.4 188 93.1
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 6.7e-102 374.0 189 93.7
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 8.8e-102 373.6 185 94.6
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 8.8e-102 373.6 188 93.1
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.1e-101 373.2 188 93.6
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.1e-101 373.2 188 93.1
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.1e-101 373.2 188 93.1
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.5e-101 372.9 188 92.6
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 2.0e-101 372.5 188 92.6
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.6e-101 372.1 188 92.0
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 3.3e-101 371.7 187 93.0
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 4.4e-101 371.3 186 93.0
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.4e-101 371.3 188 93.1
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 4.4e-101 371.3 186 93.0
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 5.7e-101 370.9 186 92.5
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 7.4e-101 370.5 188 92.6
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 7.4e-101 370.5 186 93.5
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.4e-101 370.5 186 93.5
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.4e-101 370.5 186 93.5
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.4e-101 370.5 186 93.5
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 7.4e-101 370.5 186 93.5
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 9.7e-101 370.2 188 92.6
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.7e-100 369.4 188 92.6
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.2e-100 369.0 184 93.5
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 2.2e-100 369.0 184 93.5
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.2e-100 369.0 186 91.9
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 2.2e-100 369.0 186 93.0
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 2.2e-100 369.0 184 94.0
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.8e-100 368.6 186 92.5
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.8e-100 368.6 186 92.5
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 4.8e-100 367.9 188 92.6
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 6.3e-100 367.5 187 91.4
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 8.2e-100 367.1 184 92.4
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.2e-100 367.1 188 92.0
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.2e-100 367.1 188 92.0
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 8.2e-100 367.1 187 92.0
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.1e-99 366.7 186 91.9
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.1e-99 366.7 187 90.9
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 1.4e-99 366.3 184 92.9
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.4e-99 366.3 188 91.5
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 93.5
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 93.5
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 91.4
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 2.4e-99 365.5 190 91.1
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.4e-99 365.5 207 85.5
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 2.4e-99 365.5 185 91.9
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 3.1e-99 365.2 185 93.0
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 3.1e-99 365.2 184 93.5
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 92.5
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 4.1e-99 364.8 187 92.0
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 91.4
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 91.4
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 4.1e-99 364.8 186 90.9
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 4.1e-99 364.8 185 92.4
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 4.1e-99 364.8 185 91.9
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.3e-99 364.4 185 93.0
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.3e-99 364.4 185 93.0
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 7.0e-99 364.0 185 93.0
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 7.0e-99 364.0 186 90.9
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 9.1e-99 363.6 186 90.3
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 9.1e-99 363.6 187 90.9
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 9.1e-99 363.6 190 91.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 9.1e-99 363.6 185 92.4
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 91.4
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.6e-98 362.8 186 90.9
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 2.6e-98 362.1 187 89.8
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.6e-98 362.1 184 90.8
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.6e-98 362.1 185 91.9
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 186 90.9
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 3.5e-98 361.7 186 91.9
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.5e-98 361.3 186 90.3
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 5.9e-98 360.9 186 91.4
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.9e-98 360.9 186 90.3
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.9e-98 360.9 186 90.3
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.9e-98 360.9 186 90.3
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 5.9e-98 360.9 187 88.8
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 5.9e-98 360.9 187 90.4
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 5.9e-98 360.9 186 91.4
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 7.7e-98 360.5 187 90.4
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 7.7e-98 360.5 186 91.4
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.7e-98 360.5 187 89.3
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 7.7e-98 360.5 186 90.3
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 90.9
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-97 360.1 185 90.3
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.0e-97 360.1 187 89.8
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.0e-97 360.1 187 89.3
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.7e-97 359.4 189 89.4
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.7e-97 359.4 186 89.8
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.7e-97 359.4 186 90.9
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.2e-97 359.0 189 89.9
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 2.2e-97 359.0 186 88.7
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.9e-97 358.6 187 88.8
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 3.8e-97 358.2 186 89.8
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 3.8e-97 358.2 187 88.8
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 3.8e-97 358.2 187 88.8
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 3.8e-97 358.2 187 88.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 5.0e-97 357.8 191 87.4
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 5.0e-97 357.8 186 89.2
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 8.5e-97 357.1 187 88.8
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 8.5e-97 357.1 187 88.8
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 8.5e-97 357.1 186 90.3
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.1e-96 356.7 186 88.7
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.1e-96 356.7 187 89.3
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.5e-96 356.3 186 88.7
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.5e-96 356.3 186 89.2
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.9e-96 355.9 186 89.2
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.9e-96 355.9 186 89.2
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 3.2e-96 355.1 186 88.7
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 3.2e-96 355.1 187 87.2
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 3.2e-96 355.1 187 88.8
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 3.2e-96 355.1 187 88.8
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 3.2e-96 355.1 187 88.8
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 4.2e-96 354.8 186 88.7
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 4.2e-96 354.8 202 85.6
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 5.5e-96 354.4 183 88.5
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 9.4e-96 353.6 187 88.8
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 1.6e-95 352.8 185 89.7
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 6.1e-95 350.9 187 88.2
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.4e-94 349.7 186 87.6
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 1.4e-94 349.7 193 85.5
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 3.0e-94 348.6 187 86.6
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 5.2e-94 347.8 187 86.6
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 6.7e-94 347.4 186 87.1
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 6.7e-94 347.4 189 86.8
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.8e-92 342.0 254 68.1
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 4.8e-92 341.3 181 87.8
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.1e-91 338.6 182 84.6
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 7.7e-90 334.0 182 83.5
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.0e-89 333.6 182 85.2
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.4e-88 327.0 187 85.0
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 2.7e-87 325.5 191 80.6
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.8e-86 322.8 162 92.6
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.2e-85 320.1 187 77.0
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.2e-85 320.1 182 82.4
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-79 300.1 185 78.4
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.5e-77 293.1 152 86.8
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.6e-77 292.4 144 94.4
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.2e-74 283.5 148 89.9
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 4.5e-74 281.6 143 89.5
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.2e-71 273.5 139 89.9
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.2e-66 256.9 135 88.1
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.6e-66 256.5 130 90.0
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 4.6e-66 255.0 142 85.2
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.5e-64 250.0 160 76.9
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.3e-64 247.7 187 67.4
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 2.8e-63 245.7 187 69.0
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.8e-62 243.0 128 82.8
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 6.0e-58 228.0 187 57.2
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 5.1e-57 224.9 188 54.3
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 9.2e-51 204.1 166 64.5
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.1e-46 190.7 157 64.3
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.4e-44 181.4 90 90.0
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.1e-42 176.4 90 88.9
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.6e-41 171.4 90 85.6
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.5e-40 170.2 87 87.4
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.5e-40 169.5 103 75.7
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.3e-40 168.7 87 86.2
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 7.3e-40 167.9 87 86.2
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.8e-39 166.0 87 86.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.7e-39 165.2 87 85.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.7e-39 165.2 87 85.1
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.8e-37 158.3 155 54.8
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-35 154.1 87 82.8
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.2e-34 150.6 96 78.1
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 5.1e-33 145.2 97 74.2
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.7e-33 144.4 79 82.3
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 2.5e-32 142.9 69 85.5
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 6.2e-31 138.3 70 94.3
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.9e-26 121.3 62 83.9
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.9e-26 121.3 62 83.9
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.9e-26 121.3 62 83.9
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.9e-26 121.3 62 83.9
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.9e-26 121.3 62 83.9
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.9e-26 121.3 62 83.9
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 1.1e-16 90.9 47 91.5
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 1.2e-13 80.9 44 84.1
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 8.4e-12 74.7 55 67.3


User provided reference genes

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