Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 0.0e+00 1175.2 579 100.0
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 7.1e-227 790.8 550 73.5
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 6.2e-215 751.1 572 68.2
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 1.9e-195 686.4 501 71.7
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 5.3e-182 641.7 550 60.0
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 5.3e-182 641.7 549 60.7
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 7.7e-181 637.9 575 59.3
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 6.1e-178 628.2 549 58.8
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 4.3e-176 622.1 545 59.6
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 9.7e-176 620.9 545 60.0
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 3.1e-174 615.9 574 55.6
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.2e-173 614.0 582 56.0
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 2.6e-173 612.8 547 59.6
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 3.4e-173 612.5 571 57.3
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 4.5e-173 612.1 547 58.9
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 7.7e-173 611.3 581 56.1
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.9e-171 606.7 586 54.8
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 5.5e-171 605.1 584 54.3
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 1.2e-170 604.0 588 54.9
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.1e-170 603.2 546 57.9
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 6.1e-170 601.7 574 55.6
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 2.3e-169 599.7 593 53.5
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.3e-169 599.7 516 60.1
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.0e-169 599.4 586 54.1
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 5.1e-169 598.6 546 57.0
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 8.8e-169 597.8 584 53.8
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 5.7e-168 595.1 547 56.7
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 2.2e-167 593.2 587 54.0
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 4.8e-167 592.0 576 54.3
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 1.8e-166 590.1 545 55.8
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 2.4e-166 589.7 570 53.7
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 3.1e-166 589.3 590 53.2
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 5.3e-166 588.6 577 53.6
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 4.5e-165 585.5 574 53.0
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.0e-164 584.3 584 53.4
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 2.9e-164 582.8 545 54.3
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 3.8e-164 582.4 570 54.0
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 1.2e-162 577.4 545 54.5
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 2.0e-160 570.1 634 49.4
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 3.3e-160 569.3 548 54.9
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 4.4e-160 568.9 573 52.4
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 4.4e-160 568.9 574 52.4
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 7.5e-160 568.2 573 51.7
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 2.8e-159 566.2 572 53.5
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 4.8e-159 565.5 569 51.3
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 1.1e-158 564.3 573 51.7
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 1.1e-158 564.3 584 51.5
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 1.4e-158 563.9 547 52.5
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.8e-158 563.5 573 51.5
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 5.3e-158 562.0 573 51.8
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 7.0e-158 561.6 575 52.7
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.6e-157 560.5 573 51.3
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 1.6e-157 560.5 545 52.5
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.6e-157 560.5 573 50.8
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.0e-157 560.1 574 51.4
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 3.5e-157 559.3 549 53.6
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.0e-156 557.8 575 53.2
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 2.2e-156 556.6 543 53.6
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 2.2e-156 556.6 549 53.4
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.1e-155 554.3 553 51.7
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.5e-155 553.9 545 52.7
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 3.6e-154 549.3 545 51.9
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 3.0e-153 546.2 566 51.2
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 6.8e-153 545.0 581 50.3
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 2.0e-152 543.5 572 50.7
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 4.8e-151 538.9 556 52.2
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 6.3e-151 538.5 523 54.3
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.4e-150 537.3 555 51.4
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 5.4e-150 535.4 545 51.6
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 2.5e-147 526.6 652 45.6
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 4.2e-147 525.8 527 52.2
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 3.5e-141 506.1 570 48.6
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.3e-140 504.2 549 50.6
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 2.9e-140 503.1 557 47.4
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.1e-138 496.9 471 54.6
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 2.3e-137 493.4 395 62.8
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 6.8e-137 491.9 546 47.1
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 2.5e-131 473.4 469 52.7
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 4.3e-131 472.6 604 45.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 9.5e-131 471.5 548 48.9
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 2.1e-130 470.3 469 52.9
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 3.1e-129 466.5 471 52.0
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 1.5e-123 447.6 470 51.3
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 2.6e-120 436.8 466 50.4
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 4.4e-120 436.0 465 50.8
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 4.1e-118 429.5 498 48.2
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 3.5e-117 426.4 473 49.0
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 8.9e-113 411.8 359 59.6
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 3.2e-110 403.3 581 38.7
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 3.6e-106 389.8 543 40.3
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 8.1e-106 388.7 404 50.5
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 1.4e-105 387.9 520 41.0
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 4.2e-102 376.3 548 38.1
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 4.0e-97 359.8 513 40.9
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 7.6e-96 355.5 320 56.9
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 8.1e-90 335.5 296 55.7
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 4.2e-86 323.2 391 48.6
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 4.9e-79 299.7 301 50.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.1e-75 288.5 542 37.1
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 7.4e-75 285.8 280 53.6
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.8e-74 283.9 280 52.5
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 6.5e-71 272.7 247 55.5
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.2e-69 268.5 339 44.8
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 3.7e-66 256.9 504 36.3
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 5.5e-62 243.0 260 52.3
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.2e-56 225.3 543 31.7
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 6.1e-45 186.4 457 31.3
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 7.5e-43 179.5 179 52.5
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 2.2e-42 177.9 440 30.9
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 5.5e-38 163.3 188 45.7
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.5e-35 155.2 536 26.7
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 3.5e-32 144.1 140 52.1
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 1.8e-28 131.7 388 29.1
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 6.8e-28 129.8 130 51.5
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 4.4e-27 127.1 131 54.2
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 6.3e-26 123.2 385 26.8
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 9.8e-19 99.4 75 66.7
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.3e-15 89.0 83 54.2
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 2.5e-14 84.7 57 71.9
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 1.2e-13 82.4 75 52.0
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 8.0e-13 79.7 92 45.7
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 5.8e-11 73.6 82 45.1
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 2.9e-10 71.2 562 22.6
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.4e-09 68.9 125 34.4
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 3.2e-09 67.8 102 38.2
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 9.2e-09 66.2 150 31.3
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 6.0e-08 63.5 130 33.8
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.3e-07 61.6 121 33.1
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 1.5e-06 58.9 38 68.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 1.5e-06 58.9 38 68.4
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.9e-06 58.5 45 64.4
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 7.3e-06 56.6 54 50.0
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 7.3e-06 56.6 48 58.3


User provided reference genes

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