Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 2.0e-32 141.7 67 100.0
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 3.1e-25 117.9 72 79.2
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 4.0e-25 117.5 72 79.2
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 4.0e-25 117.5 72 79.2
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 4.0e-25 117.5 72 79.2
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 6.9e-25 116.7 72 79.2
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 6.9e-25 116.7 72 79.2
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 9.0e-25 116.3 72 79.2
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 9.0e-25 116.3 72 79.2
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 9.0e-25 116.3 72 79.2
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 9.0e-25 116.3 72 77.8
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 9.0e-25 116.3 72 77.8
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 1.2e-24 115.9 72 79.2
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 1.2e-24 115.9 72 79.2
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 1.2e-24 115.9 72 79.2
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 1.2e-24 115.9 72 77.8
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 1.2e-24 115.9 72 77.8
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 1.2e-24 115.9 72 77.8
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 1.2e-24 115.9 72 77.8
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.5e-24 115.5 72 77.8
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 1.5e-24 115.5 72 76.4
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.5e-24 115.5 72 76.4
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 1.5e-24 115.5 72 77.8
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 1.5e-24 115.5 72 77.8
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 76.4
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 76.4
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 77.8
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 77.8
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 77.8
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 77.8
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 77.8
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 77.8
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 77.8
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 76.4
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 2.0e-24 115.2 72 77.8
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 2.6e-24 114.8 72 76.4
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 2.6e-24 114.8 72 76.4
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 2.6e-24 114.8 72 77.8
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 2.6e-24 114.8 72 77.8
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 2.6e-24 114.8 72 75.0
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 3.4e-24 114.4 72 76.4
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 4.5e-24 114.0 69 78.3
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 77.8
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 4.5e-24 114.0 69 78.3
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 4.5e-24 114.0 72 76.4
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 5.8e-24 113.6 72 73.6
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 5.8e-24 113.6 72 73.6
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 5.8e-24 113.6 72 73.6
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 5.8e-24 113.6 72 75.0
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 5.8e-24 113.6 72 75.0
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 5.8e-24 113.6 72 76.4
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 75.0
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 75.0
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 77.8
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 77.8
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 76.4
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 75.0
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 77.8
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 75.0
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 75.0
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 75.0
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 7.6e-24 113.2 72 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 9.9e-24 112.8 69 76.8
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 9.9e-24 112.8 72 73.6
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 1.3e-23 112.5 72 75.0
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 1.3e-23 112.5 69 76.8
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 1.3e-23 112.5 72 75.0
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 1.7e-23 112.1 72 75.0
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 1.7e-23 112.1 72 75.0
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 1.7e-23 112.1 72 75.0
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 1.7e-23 112.1 72 75.0
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 1.7e-23 112.1 72 75.0
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 1.7e-23 112.1 72 75.0
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 1.7e-23 112.1 72 75.0
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 1.7e-23 112.1 72 75.0
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.2e-23 111.7 69 75.4
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 2.2e-23 111.7 72 75.0
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 2.2e-23 111.7 72 73.6
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 2.9e-23 111.3 69 75.4
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 2.9e-23 111.3 69 75.4
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 3.8e-23 110.9 72 75.0
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 3.8e-23 110.9 71 71.8
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 3.8e-23 110.9 72 73.6
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 3.8e-23 110.9 72 73.6
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 3.8e-23 110.9 72 75.0
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 3.8e-23 110.9 72 75.0
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 4.9e-23 110.5 71 73.2
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 4.9e-23 110.5 71 73.2
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 8.4e-23 109.8 69 73.9
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 3.2e-22 107.8 69 72.5
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 3.2e-22 107.8 71 70.4
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 3.2e-22 107.8 71 70.4
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 5.4e-22 107.1 84 66.7
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 5.4e-22 107.1 72 72.2
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 7.1e-22 106.7 71 71.8
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 9.3e-22 106.3 104 55.8
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 1.2e-21 105.9 85 61.2
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 1.6e-21 105.5 68 72.1
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 2.1e-21 105.1 64 78.1
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 2.1e-21 105.1 64 78.1
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 4.6e-21 104.0 63 77.8
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.6e-21 104.0 72 72.2
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 4.6e-21 104.0 64 76.6
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 4.6e-21 104.0 64 76.6
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 4.6e-21 104.0 64 76.6
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 4.6e-21 104.0 64 76.6
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 6.0e-21 103.6 63 77.8
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 6.0e-21 103.6 63 77.8
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 6.0e-21 103.6 69 71.0
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 6.0e-21 103.6 63 77.8
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 6.0e-21 103.6 63 77.8
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 6.0e-21 103.6 63 77.8
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 7.9e-21 103.2 64 76.6
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 7.9e-21 103.2 64 75.0
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 7.9e-21 103.2 64 75.0
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 7.9e-21 103.2 63 77.8
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 7.9e-21 103.2 72 66.7
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 1.0e-20 102.8 64 76.6
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 1.0e-20 102.8 64 76.6
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 1.8e-20 102.1 69 71.0
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.3e-20 101.7 65 73.8
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 2.3e-20 101.7 64 75.0
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 2.3e-20 101.7 64 76.6
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 3.0e-20 101.3 68 76.5
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 5.1e-20 100.5 71 66.2
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 1.9e-19 98.6 67 70.1
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.9e-19 98.6 67 71.6
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.9e-19 98.6 67 71.6
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 1.6e-18 95.5 124 46.8
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 7.6e-16 86.7 59 69.5
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.3e-15 85.9 60 70.0
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 1.7e-15 85.5 57 71.9
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 2.2e-15 85.1 57 71.9
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.1e-14 82.8 53 71.7
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 1.9e-14 82.0 120 42.5
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 2.4e-14 81.6 56 67.9
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 7.9e-13 76.6 53 67.9
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 7.9e-13 76.6 53 67.9
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 1.0e-12 76.3 63 55.6
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-12 73.9 53 64.2
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 8.7e-12 73.2 62 53.2
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 6.2e-10 67.0 37 83.8
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.0e-09 64.3 30 96.7
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 5.3e-09 63.9 37 75.7
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-08 62.4 34 82.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 5.8e-08 60.5 30 90.0
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 2.9e-07 58.2 42 64.3
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 2.9e-07 58.2 42 64.3
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 1.4e-06 55.8 37 62.2
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 5.5e-06 53.9 38 55.3
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 5.5e-06 53.9 30 83.3
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 5.5e-06 53.9 55 50.9
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 5.5e-06 53.9 41 56.1


User provided reference genes

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