Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 2.0e-181 639.0 336 100.0
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 5.7e-152 541.2 341 85.3
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.8e-143 511.5 321 85.4
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 6.3e-135 484.6 337 77.4
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 2.4e-134 482.6 372 74.7
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 9.1e-134 480.7 336 78.3
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 1.6e-130 469.9 340 76.2
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 6.1e-130 468.0 337 75.4
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 1.0e-129 467.2 339 75.5
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 2.3e-129 466.1 338 76.0
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.5e-128 463.4 337 74.8
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 2.6e-128 462.6 336 75.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 9.7e-128 460.7 339 74.9
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 9.7e-128 460.7 338 74.3
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 1.3e-127 460.3 338 74.9
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.2e-127 459.5 338 74.6
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 2.8e-127 459.1 336 73.5
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 6.3e-127 458.0 336 73.8
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 8.2e-127 457.6 336 73.5
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 1.4e-126 456.8 343 71.7
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.8e-126 456.4 337 73.6
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 3.1e-126 455.7 337 73.9
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 3.1e-126 455.7 342 73.4
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 5.3e-126 454.9 338 73.7
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 9.1e-126 454.1 339 73.7
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.2e-125 453.8 348 72.7
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 2.6e-125 452.6 338 73.4
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 3.5e-125 452.2 337 74.5
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 5.9e-125 451.4 338 73.7
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 3.8e-124 448.7 338 73.1
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 8.5e-124 447.6 337 72.7
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.5e-123 446.8 339 71.7
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 1.9e-123 446.4 343 73.8
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 7.2e-123 444.5 313 75.7
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 1.6e-122 443.4 335 71.3
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 2.1e-122 443.0 338 71.6
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 8.0e-122 441.0 337 72.7
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 1.0e-121 440.7 337 71.5
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 3.0e-121 439.1 338 70.7
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 8.3e-119 431.0 337 71.5
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.1e-118 430.6 336 70.8
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.1e-118 430.6 337 70.0
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.8e-118 429.9 331 72.2
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.1e-118 429.1 336 70.2
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 7.0e-118 427.9 331 71.3
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 1.2e-117 427.2 335 69.0
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 2.0e-117 426.4 332 70.5
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.7e-117 426.0 331 71.3
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 1.0e-116 424.1 318 73.3
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.0e-116 424.1 339 70.5
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 1.3e-116 423.7 336 69.3
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 1.3e-116 423.7 333 70.9
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 5.0e-116 421.8 332 70.8
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 6.5e-116 421.4 272 82.0
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 8.5e-116 421.0 335 69.6
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 3.2e-115 419.1 302 73.5
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 5.5e-115 418.3 337 66.8
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 7.2e-115 417.9 337 68.2
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 9.4e-115 417.5 345 67.5
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 9.4e-115 417.5 335 69.3
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 9.4e-115 417.5 342 67.8
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 1.2e-114 417.2 341 67.7
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.6e-114 416.8 338 68.0
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 6.1e-114 414.8 344 67.4
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 6.1e-114 414.8 344 67.4
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 8.0e-114 414.5 342 67.0
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 1.4e-113 413.7 313 74.1
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 1.8e-113 413.3 334 68.3
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 1.8e-113 413.3 339 67.6
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.8e-113 413.3 338 67.5
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 2.3e-113 412.9 366 63.9
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 3.0e-113 412.5 298 74.5
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.5e-112 410.2 356 66.9
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 2.0e-112 409.8 338 66.6
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 2.0e-112 409.8 338 66.9
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 2.6e-112 409.5 339 66.7
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 2.6e-112 409.5 341 66.9
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 1.3e-111 407.1 366 65.3
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 1.7e-111 406.8 338 66.6
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 4.8e-111 405.2 338 69.8
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 1.4e-110 403.7 338 69.8
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.8e-110 403.3 339 67.3
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 7.0e-110 401.4 365 63.6
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 4.5e-109 398.7 342 67.0
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 1.9e-107 393.3 379 60.7
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 3.0e-105 386.0 340 63.8
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.6e-104 382.9 331 65.0
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 2.6e-104 382.9 406 58.1
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 5.7e-104 381.7 313 66.5
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 9.8e-104 380.9 272 74.6
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.3e-103 380.6 317 65.9
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.7e-103 380.2 319 66.1
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 1.7e-103 380.2 297 69.7
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 1.8e-102 376.7 294 68.4
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 5.0e-100 368.6 265 74.3
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 4.7e-98 362.1 342 60.5
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 1.0e-97 360.9 307 67.8
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 5.2e-97 358.6 303 66.0
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 7.5e-96 354.8 241 78.8
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 2.9e-95 352.8 300 64.3
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.1e-94 350.9 342 62.0
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 4.1e-94 349.0 301 63.8
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 1.3e-92 344.0 274 69.0
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 3.0e-92 342.8 305 63.3
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 3.9e-92 342.4 302 62.6
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.1e-91 340.9 208 84.1
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 4.7e-90 335.5 248 69.8
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 1.0e-84 317.8 219 76.3
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.7e-84 317.0 308 56.8
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 1.5e-83 313.9 210 81.0
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.1e-78 297.7 206 74.8
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 2.1e-77 293.5 271 59.8
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 7.3e-75 285.0 234 68.8
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.6e-74 283.9 204 75.0
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.7e-71 273.9 167 85.0
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.1e-58 230.3 306 43.8
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 6.2e-58 228.8 206 64.6
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 3.5e-53 213.0 211 61.6
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 2.5e-38 163.7 277 40.8
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 2.5e-35 153.7 106 75.5
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.3e-35 153.3 154 60.4
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 2.2e-31 140.6 147 57.8
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 4.3e-27 126.3 113 61.9
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 5.9e-24 115.9 108 62.0
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 5.5e-22 109.4 118 56.8
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 2.7e-21 107.1 79 69.6
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.7e-21 106.3 61 86.9
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.7e-21 106.3 62 87.1
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 7.9e-21 105.5 62 88.7
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.0e-20 105.1 244 36.5
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.8e-20 104.4 62 88.7
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 3.3e-19 100.1 106 51.9
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 9.7e-19 98.6 99 50.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 3.7e-18 96.7 81 55.6
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 8.2e-18 95.5 224 34.4
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 1.8e-17 94.4 103 54.4
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.1e-17 93.2 56 87.5
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.3e-17 92.8 55 89.1
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 3.8e-15 86.7 81 59.3
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.7e-10 71.2 37 86.5
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 1.4e-09 68.2 42 76.2
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 9.1e-09 65.5 40 77.5
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 2.0e-08 64.3 35 85.7
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 2.0e-08 64.3 35 85.7
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 3.5e-08 63.5 39 79.5
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 2.9e-07 60.5 128 37.5


User provided reference genes

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