Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.0e-90 334.7 169 100.0
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.2e-88 328.9 169 98.2
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 4.2e-87 324.7 169 95.9
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 7.1e-87 323.9 169 95.9
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 6.7e-85 317.4 169 95.3
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.5e-84 316.2 169 91.7
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 2.5e-84 315.5 167 93.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 5.7e-84 314.3 168 91.7
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.4e-84 313.9 169 91.1
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 8.2e-83 310.5 169 90.5
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.8e-82 309.3 169 90.5
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.8e-82 309.3 169 90.5
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 2.4e-82 308.9 169 89.9
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.4e-82 308.9 169 89.9
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 2.4e-82 308.9 169 89.9
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 3.1e-82 308.5 168 90.5
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.1e-82 308.5 169 89.9
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 5.3e-82 307.8 168 89.3
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 9.0e-82 307.0 168 89.9
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 9.0e-82 307.0 166 91.0
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.0e-82 307.0 166 91.0
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.0e-82 307.0 166 91.0
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 9.0e-82 307.0 166 91.0
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-81 306.2 166 91.0
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.6e-81 305.4 169 89.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 5.9e-81 304.3 168 89.3
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 5.9e-81 304.3 169 89.3
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 7.7e-81 303.9 169 88.8
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 7.7e-81 303.9 169 88.8
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.0e-80 303.5 169 87.6
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-80 303.5 166 88.6
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.3e-80 303.1 168 89.3
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.7e-80 302.8 167 86.8
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.2e-80 302.4 169 88.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.9e-80 302.0 169 87.6
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 88.2
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 88.8
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 6.5e-80 300.8 169 87.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 87.6
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.4e-79 299.7 168 87.5
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.4e-79 299.7 169 87.0
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 87.0
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.5e-79 298.9 168 87.5
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.5e-79 298.9 168 87.5
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 4.2e-79 298.1 169 87.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 4.2e-79 298.1 169 87.6
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 5.5e-79 297.7 166 87.3
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 5.5e-79 297.7 169 87.0
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 84.0
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 87.0
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 85.8
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.1e-78 295.8 169 85.8
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 2.7e-78 295.4 166 88.0
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 4.6e-78 294.7 166 88.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.6e-78 294.7 183 82.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 87.6
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 87.0
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.1e-78 294.3 183 82.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.1e-78 294.3 183 82.0
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 6.1e-78 294.3 166 86.7
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 85.8
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.4e-77 293.1 169 86.4
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.8e-77 292.7 169 85.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.8e-77 292.7 169 85.2
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 84.6
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 85.2
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 84.6
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 84.0
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 8.8e-77 290.4 186 80.1
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.1e-76 290.0 169 84.6
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 83.4
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.7e-76 287.7 167 84.4
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 83.4
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.7e-75 286.2 169 87.0
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 82.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 2.8e-75 285.4 182 79.1
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.7e-75 285.0 167 85.6
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 3.7e-75 285.0 169 83.4
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 8.2e-75 283.9 149 92.6
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 82.2
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 82.2
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 4.1e-74 281.6 192 75.5
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 6.9e-74 280.8 150 90.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 9.1e-74 280.4 194 75.3
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.2e-73 280.0 149 91.3
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.5e-73 279.6 169 80.5
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.5e-73 279.6 207 70.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.0e-73 279.3 169 79.9
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 2.6e-73 278.9 169 81.7
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 7.7e-73 277.3 149 89.3
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.3e-72 276.6 169 81.7
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.3e-72 276.6 169 81.7
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.7e-72 276.2 149 88.6
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.7e-72 276.2 169 77.5
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.9e-72 275.4 149 87.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.8e-72 275.0 214 68.7
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 8.5e-72 273.9 148 89.9
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.1e-71 273.5 143 91.6
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.9e-71 272.7 168 76.2
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 7.2e-71 270.8 158 84.2
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.1e-70 267.7 158 83.5
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 7.9e-70 267.3 168 75.6
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.0e-69 266.9 150 86.0
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.0e-69 266.9 145 88.3
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.0e-69 266.9 166 80.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.4e-69 266.5 169 78.7
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.3e-69 265.8 167 77.2
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.1e-68 263.5 154 83.1
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.4e-68 261.5 153 85.0
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 7.4e-68 260.8 147 84.4
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.7e-67 259.6 169 77.5
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.1e-66 256.9 239 59.8
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 3.1e-66 255.4 177 75.7
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 4.1e-66 255.0 149 83.2
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 2.6e-65 252.3 168 75.0
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.1e-62 242.7 149 79.2
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 2.1e-62 242.7 126 90.5
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 2.7e-62 242.3 167 73.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.0e-61 240.4 124 91.9
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.3e-61 239.2 149 79.9
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 2.3e-61 239.2 156 78.8
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.0e-60 236.1 170 74.7
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 4.4e-60 235.0 152 77.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.1e-58 230.3 166 75.9
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.8e-58 229.6 123 87.0
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 5.9e-57 224.6 168 70.2
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.1e-55 220.3 132 82.6
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 1.5e-55 219.9 124 90.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 8.0e-54 214.2 188 58.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 8.0e-54 214.2 155 67.1
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-53 213.8 166 69.3
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.8e-53 213.0 124 85.5
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 4.0e-53 211.8 124 87.1
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 6.7e-53 211.1 121 87.6
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 8.8e-53 210.7 121 86.8
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 8.8e-53 210.7 121 86.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 2.0e-52 209.5 148 75.0
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-52 209.5 121 86.0
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-52 208.4 123 85.4
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.3e-51 204.5 158 71.5
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.1e-50 202.2 141 75.2
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.5e-47 192.6 134 68.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 2.2e-43 179.5 106 86.8
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 3.5e-41 172.2 90 86.7
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-40 170.6 90 92.2
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.2e-39 164.5 94 93.6
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 2.7e-33 146.0 83 89.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 3.3e-31 139.0 112 64.3
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 7.5e-28 127.9 94 67.0
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 9.8e-28 127.5 100 65.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.2e-26 122.5 82 73.2
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.2e-26 122.5 73 86.3
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 5.4e-26 121.7 103 63.1
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.3e-24 116.3 78 70.5
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.5e-23 112.8 75 74.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.2e-22 108.2 72 72.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.9e-19 98.6 64 75.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 7.0e-18 94.7 153 38.6
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-17 92.4 65 72.3
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 4.6e-17 92.0 133 39.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-15 85.5 49 89.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-15 85.5 49 89.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 8.1e-14 81.3 108 51.9
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.2e-13 78.6 44 79.5
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 6.8e-13 78.2 165 36.4
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-09 67.4 38 76.3


User provided reference genes

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