Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 9.6e-148 528.5 483 100.0
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.4e-98 364.4 483 74.1
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 1.1e-90 339.0 483 74.5
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 4.7e-70 270.4 483 76.0
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 1.4e-53 215.7 210 60.5
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 4.3e-39 167.5 408 51.7
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 6.9e-37 160.2 406 43.1
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 2.4e-34 151.8 404 45.8
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 3.2e-34 151.4 409 45.2
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.9e-31 142.1 407 53.3
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 2.0e-28 132.1 483 35.8
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.2e-27 128.6 149 47.0
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 3.2e-26 124.8 248 50.4
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 2.1e-25 122.1 250 32.4
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 7.9e-25 120.2 406 51.0
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.3e-24 119.4 134 48.5
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.3e-24 119.4 134 46.3
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 1.8e-24 119.0 131 46.6
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 1.1e-23 116.3 211 35.5
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 2.5e-23 115.2 131 45.0
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 9.6e-23 113.2 134 43.3
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 9.6e-23 113.2 210 35.2
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 1.3e-22 112.8 132 47.0
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 2.8e-22 111.7 209 38.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 2.8e-22 111.7 135 45.2
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 4.8e-22 110.9 441 50.3
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 1.4e-21 109.4 127 45.7
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.4e-21 109.4 160 40.6
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 3.1e-21 108.2 131 44.3
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 5.3e-21 107.5 134 44.0
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 6.9e-21 107.1 198 36.9
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 9.0e-21 106.7 176 36.4
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 1.2e-20 106.3 182 37.9
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.5e-20 105.9 456 35.5
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 2.0e-20 105.5 131 42.7
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 3.4e-20 104.8 198 35.9
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 3.4e-20 104.8 404 56.9
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 5.8e-20 104.0 148 40.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 7.6e-20 103.6 173 38.7
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 1.0e-19 103.2 124 45.2
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 2.9e-19 101.7 128 45.3
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.9e-19 101.7 128 40.6
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 8.4e-19 100.1 287 28.6
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 8.4e-19 100.1 136 44.1
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 2.5e-18 98.6 281 27.8
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.2e-17 96.3 154 36.4
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 2.1e-17 95.5 405 44.4
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 2.1e-17 95.5 159 36.5
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.1e-17 95.5 131 44.3
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.7e-17 95.1 130 39.2
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 3.5e-17 94.7 185 35.1
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.8e-16 92.4 325 27.1
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.8e-16 92.4 325 27.1
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.3e-16 92.0 246 29.3
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 2.3e-16 92.0 132 40.2
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.1e-15 89.7 426 43.0
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.5e-15 89.4 426 46.5
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.9e-15 89.0 131 35.1
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 4.3e-15 87.8 276 46.4
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.6e-14 85.9 328 31.1
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 2.4e-13 82.0 131 35.9
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.4e-13 82.0 142 34.5
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 5.3e-13 80.9 132 34.8
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 6.9e-13 80.5 201 30.3
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 9.0e-13 80.1 132 35.6
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 9.0e-13 80.1 146 34.9
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.2e-12 79.7 129 35.7
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 1.5e-12 79.3 163 32.5
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.0e-12 79.0 249 34.5
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 3.4e-12 78.2 133 33.1
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 4.5e-12 77.8 127 33.9
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 5.9e-12 77.4 125 34.4
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.0e-11 76.6 128 29.7
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 1.0e-11 76.6 147 33.3
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 1.3e-11 76.3 134 34.3
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 1.3e-11 76.3 184 31.0
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 6.5e-11 73.9 316 24.7
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 1.4e-10 72.8 244 26.2
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.9e-10 72.4 129 34.1
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 1.9e-10 72.4 245 26.1
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 2.5e-10 72.0 132 31.1
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 3.2e-10 71.6 131 37.4
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 3.2e-10 71.6 131 37.4
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 7.2e-10 70.5 150 32.0
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 7.2e-10 70.5 84 46.4
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 1.2e-09 69.7 320 26.2
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 1.2e-09 69.7 320 26.2
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 1.6e-09 69.3 127 31.5
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 2.7e-09 68.6 176 29.5
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 2.7e-09 68.6 154 32.5
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 3.9e-08 64.7 202 29.2
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.3e-07 61.2 331 23.6
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 4.3e-07 61.2 151 29.8
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 9.7e-07 60.1 212 63.2
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 9.7e-07 60.1 56 53.6
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 1.3e-06 59.7 171 28.7
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 1.6e-06 59.3 212 76.9


User provided reference genes

Program Settings