Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 5.3e-284 980.3 484 100.0
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 1.5e-201 706.4 439 80.4
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 5.4e-196 688.0 454 75.6
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 9.5e-185 650.6 392 81.6
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 9.4e-132 474.6 495 52.3
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.2e-124 449.5 500 50.2
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 2.0e-121 440.3 496 50.8
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 1.3e-120 437.6 488 50.8
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 1.3e-120 437.6 488 50.8
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 2.9e-117 426.4 493 49.3
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.9e-116 423.7 509 47.9
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 1.4e-114 417.5 499 48.3
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 4.8e-112 409.1 510 47.3
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 6.3e-112 408.7 496 46.8
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 1.8e-111 407.1 443 51.9
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 5.3e-111 405.6 483 48.7
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.2e-110 404.4 476 48.9
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 2.7e-110 403.3 457 49.0
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 5.0e-109 399.1 494 46.4
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 8.5e-109 398.3 498 45.4
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.9e-108 397.1 482 46.9
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 4.7e-107 392.5 475 46.3
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 3.0e-106 389.8 479 45.5
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 5.2e-106 389.0 472 46.8
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.2e-106 389.0 466 49.1
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 2.2e-104 383.6 450 46.7
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 8.3e-104 381.7 489 46.2
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 1.1e-103 381.3 482 45.4
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 5.4e-103 379.0 465 47.7
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 5.4e-103 379.0 489 46.0
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 7.0e-103 378.6 489 45.8
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 2.7e-102 376.7 489 45.2
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.7e-101 374.0 523 42.4
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.5e-100 370.9 447 47.4
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.5e-100 370.9 464 45.5
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.9e-100 370.5 478 44.4
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 2.5e-100 370.2 479 45.1
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 3.3e-100 369.8 424 49.8
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 3.3e-100 369.8 465 47.3
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 4.2e-100 369.4 488 45.5
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 5.5e-100 369.0 492 44.7
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 7.2e-100 368.6 480 45.6
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 7.2e-100 368.6 481 44.3
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 9.5e-100 368.2 478 43.9
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.5e-100 368.2 445 47.0
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.8e-99 366.7 447 46.8
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.0e-98 364.8 494 43.1
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.0e-98 362.8 420 49.0
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 5.2e-98 362.5 455 45.7
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 1.7e-96 357.5 485 44.1
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.1e-95 354.8 485 43.5
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 1.1e-95 354.8 478 43.1
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.8e-95 354.0 558 41.4
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 1.2e-94 351.3 477 41.9
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.2e-94 351.3 477 43.0
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.3e-93 347.1 479 43.4
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.9e-93 346.7 498 43.0
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.5e-92 344.4 461 43.4
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 2.5e-92 343.6 475 43.2
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 4.3e-92 342.8 446 45.7
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 5.6e-92 342.4 473 44.4
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 2.1e-91 340.5 471 42.0
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 1.2e-89 334.7 447 44.5
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 2.6e-89 333.6 494 41.9
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.4e-89 332.8 447 44.3
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 5.8e-89 332.4 469 43.3
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 9.2e-87 325.1 534 39.0
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 7.8e-86 322.0 484 41.7
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 6.6e-85 318.9 416 45.7
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 1.5e-84 317.8 468 42.3
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 7.3e-84 315.5 504 41.7
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.4e-82 311.2 437 43.0
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 2.0e-81 307.4 353 48.7
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 1.3e-80 304.7 319 50.8
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 3.7e-80 303.1 317 49.2
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 1.6e-78 297.7 439 41.7
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 8.6e-77 292.0 488 39.3
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.3e-76 290.0 494 38.7
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 5.6e-76 289.3 427 40.3
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 3.6e-75 286.6 449 40.3
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.0e-74 283.1 489 40.7
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 1.2e-73 281.6 342 44.4
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 2.0e-73 280.8 453 40.0
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 5.8e-73 279.3 457 38.9
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.7e-72 277.7 317 47.6
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.1e-71 275.0 319 47.6
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 3.0e-69 266.9 438 38.6
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 3.0e-69 266.9 303 47.5
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.5e-68 263.8 406 41.1
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 4.3e-68 263.1 426 37.6
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 9.5e-68 261.9 312 48.1
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.2e-66 256.1 328 41.2
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 3.4e-65 253.4 409 41.1
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 1.7e-64 251.1 286 46.9
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 2.2e-64 250.8 480 36.5
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 4.2e-63 246.5 226 53.1
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 7.8e-62 242.3 446 34.5
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 7.8e-62 242.3 307 45.0
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.3e-61 241.5 442 35.3
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 1.3e-61 241.5 350 40.3
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 5.1e-61 239.6 170 67.1
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 6.6e-61 239.2 438 34.7
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 8.7e-61 238.8 126 87.3
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 4.7e-59 233.0 491 32.8
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 1.1e-58 231.9 325 42.8
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.4e-58 231.5 353 43.1
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 1.4e-58 231.5 391 40.4
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.4e-58 230.7 321 44.2
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 2.4e-58 230.7 412 37.1
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 6.9e-58 229.2 230 52.6
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 1.2e-57 228.4 312 42.9
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 3.4e-57 226.9 321 43.3
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 4.4e-57 226.5 235 49.4
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.3e-56 224.9 314 43.9
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 2.9e-56 223.8 246 47.6
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 2.9e-56 223.8 235 49.4
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.2e-55 219.9 323 39.0
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 4.2e-55 219.9 240 48.3
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 5.4e-55 219.5 361 35.7
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 9.3e-55 218.8 244 47.1
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 9.3e-55 218.8 244 47.1
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 8.1e-51 205.7 327 39.8
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 8.1e-51 205.7 327 39.8
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 2.4e-50 204.1 327 39.8
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 1.2e-49 201.8 429 36.4
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.0e-49 201.1 434 33.6
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 6.4e-48 196.1 418 32.3
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 8.4e-48 195.7 346 36.1
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 2.4e-47 194.1 198 48.0
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 3.9e-45 186.8 275 39.6
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 4.3e-44 183.3 215 45.6
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 2.9e-40 170.6 313 35.1
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 4.6e-38 163.3 121 63.6
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.4e-31 141.7 358 32.1
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 2.3e-29 134.4 308 33.1
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 5.1e-29 133.3 255 34.1
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.5e-28 131.7 325 29.5
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 2.5e-28 131.0 330 29.4
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 4.3e-28 130.2 188 41.5
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 9.7e-28 129.0 303 35.0
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 9.0e-26 122.5 245 38.4
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 3.2e-23 114.0 79 60.8
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 1.4e-21 108.6 366 26.2
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 3.1e-18 97.4 125 44.0
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 9.1e-18 95.9 139 38.1
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.6e-17 94.4 82 50.0
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.5e-15 87.8 154 30.5
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 2.5e-15 87.8 156 36.5
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 3.2e-15 87.4 151 32.5
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 5.5e-15 86.7 180 31.7
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.4e-15 85.9 151 31.8
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.7e-14 83.6 243 25.9
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 8.8e-13 79.3 88 48.9
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.3e-08 65.5 59 52.5
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 2.2e-08 64.7 54 55.6


User provided reference genes

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