Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 1.2e-197 693.0 345 100.0
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.4e-161 573.2 347 84.4
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 1.1e-158 563.5 347 83.6
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 8.7e-156 553.9 385 76.4
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 7.9e-117 424.5 334 67.7
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 1.4e-116 423.7 347 65.1
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 3.0e-116 422.5 345 64.3
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 8.8e-116 421.0 333 66.7
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 8.2e-114 414.5 347 64.0
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 5.3e-113 411.8 336 63.7
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 2.0e-112 409.8 348 62.4
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 2.6e-112 409.5 345 60.9
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 2.6e-112 409.5 349 63.6
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 4.5e-112 408.7 348 64.9
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 1.3e-111 407.1 334 66.2
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 2.2e-111 406.4 347 62.2
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.1e-110 404.1 343 62.7
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.9e-110 403.3 345 62.6
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.5e-110 402.9 345 62.6
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 5.5e-110 401.7 345 60.9
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.6e-109 400.2 345 62.3
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 3.6e-109 399.1 348 61.2
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.6e-109 399.1 352 62.8
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 6.1e-109 398.3 352 63.1
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 1.4e-108 397.1 350 63.4
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.3e-108 396.4 352 62.5
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 1.5e-107 393.7 333 62.8
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 9.7e-107 391.0 350 60.6
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.7e-106 390.2 350 62.9
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 2.8e-106 389.4 348 59.8
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 2.8e-106 389.4 343 58.9
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 2.6e-104 382.9 385 54.8
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.2e-103 379.8 348 59.5
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.0e-103 378.6 348 59.5
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 6.5e-103 378.3 347 57.1
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 1.9e-102 376.7 345 58.3
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 3.2e-102 375.9 371 56.1
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 5.5e-102 375.2 349 59.0
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 2.1e-101 373.2 347 59.4
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 3.6e-101 372.5 335 58.2
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 6.1e-101 371.7 350 58.3
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 1.0e-100 370.9 344 58.4
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 1.4e-100 370.5 343 56.3
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 1.4e-100 370.5 350 57.1
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 1.8e-100 370.2 344 56.7
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 2.3e-100 369.8 348 56.6
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 3.0e-100 369.4 349 58.2
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 3.0e-100 369.4 353 58.6
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 3.0e-100 369.4 368 53.8
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 6.7e-100 368.2 350 58.0
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 8.8e-100 367.9 343 58.6
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.2e-99 367.5 353 56.9
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 2.0e-99 366.7 344 58.4
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 2.6e-99 366.3 348 56.9
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 2.6e-99 366.3 348 56.6
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 3.3e-99 365.9 349 57.0
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 4.4e-99 365.5 344 56.4
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 4.4e-99 365.5 350 57.7
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 7.5e-99 364.8 334 57.8
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 6.3e-98 361.7 348 57.8
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 6.3e-98 361.7 337 58.8
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 1.8e-97 360.1 344 56.4
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 1.8e-97 360.1 344 57.8
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 1.2e-96 357.5 352 57.7
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 4.5e-96 355.5 365 52.6
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 4.5e-96 355.5 348 56.6
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 1.3e-95 354.0 347 53.3
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 3.8e-95 352.4 362 53.6
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 8.5e-95 351.3 347 55.9
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 3.2e-94 349.4 334 56.9
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 3.2e-94 349.4 349 53.0
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 5.5e-94 348.6 357 55.5
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 5.5e-94 348.6 347 56.5
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 9.4e-94 347.8 301 61.5
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 2.7e-93 346.3 357 52.1
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 1.4e-92 344.0 357 51.5
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.4e-92 344.0 358 54.2
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 1.4e-92 344.0 341 54.3
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 6.8e-92 341.7 364 53.3
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 1.5e-91 340.5 341 54.0
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 2.0e-91 340.1 345 55.4
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 7.5e-91 338.2 329 54.7
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 7.5e-91 338.2 341 54.0
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 9.8e-91 337.8 344 53.5
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 2.2e-90 336.7 345 53.9
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 6.3e-90 335.1 344 54.1
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 1.6e-88 330.5 341 53.4
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 4.5e-88 328.9 347 52.7
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 2.9e-87 326.2 339 51.0
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 2.5e-86 323.2 305 54.8
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 3.6e-85 319.3 344 52.3
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 1.2e-83 314.3 344 51.7
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 3.4e-83 312.8 328 53.0
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 4.4e-83 312.4 347 51.3
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 1.7e-79 300.4 349 52.1
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.9e-78 297.0 347 49.3
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 2.8e-77 293.1 346 50.3
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 1.1e-73 281.2 338 50.3
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.6e-72 277.3 218 62.4
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 1.3e-71 274.2 341 45.2
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 4.9e-66 255.8 294 49.3
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 3.6e-61 239.6 345 43.8
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 6.8e-60 235.3 335 45.4
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 5.8e-59 232.3 198 62.1
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 4.9e-58 229.2 185 62.2
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 1.2e-56 224.6 315 44.1
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 2.5e-54 216.9 297 43.1
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 2.5e-54 216.9 297 43.1
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 3.3e-54 216.5 297 43.1
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 3.8e-50 203.0 354 36.2
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-48 197.6 164 57.3
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 6.6e-47 192.2 340 41.8
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 9.6e-46 188.3 286 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 8.1e-45 185.3 338 36.7
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.5e-43 181.0 313 39.3
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 9.9e-43 178.3 287 43.9
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 2.2e-42 177.2 344 35.8
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 4.2e-41 172.9 351 34.2
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 4.3e-38 162.9 311 35.0
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.8e-34 149.8 117 61.5
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 3.5e-32 143.3 125 58.4
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 3.5e-32 143.3 325 34.2
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.3e-31 141.4 117 59.0
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 3.3e-30 136.7 150 48.7
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 2.2e-26 124.0 130 54.6
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 2.2e-26 124.0 130 54.6
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 4.9e-26 122.9 229 38.4
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 5.5e-25 119.4 209 40.7
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 1.9e-22 110.9 207 39.1
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 1.8e-20 104.4 224 34.8
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 2.5e-17 94.0 173 33.5
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 3.2e-17 93.6 127 42.5
SHI16388 Sapria himalayana HOM05D004826 ORTHO05D006367 6.7e-15 85.9 158 38.6
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 8.2e-13 79.0 178 36.0
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 2.9e-10 70.5 72 58.3
Oeu040654.1 Olea europaea HOM05D004826 ORTHO05D006367 5.0e-10 69.7 96 41.7
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 5.0e-10 69.7 215 27.0
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 3.2e-09 67.0 108 40.7
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 3.2e-09 67.0 315 23.5
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 3.9e-07 60.1 66 51.5
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 6.7e-07 59.3 84 47.6
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 4.3e-06 56.6 84 46.4
C08p52400 Brassica napus HOM05D004826 ORTHO05D042801 4.3e-06 56.6 61 54.1
C01p00040 Brassica napus HOM05D004826 ORTHO05D006367 9.7e-06 55.5 122 35.2


User provided reference genes

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