Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 0.0e+00 2167.9 1096 100.0
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 0.0e+00 1723.4 1094 81.3
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 0.0e+00 1719.1 1091 81.8
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 0.0e+00 1480.3 1099 73.0
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 0.0e+00 1162.1 1096 58.3
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 0.0e+00 1124.4 1092 58.1
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 0.0e+00 1105.9 1079 56.0
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 0.0e+00 1075.8 1066 54.7
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 4.1e-308 1061.6 1115 53.7
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 1.8e-303 1046.2 1106 53.0
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 7.4e-302 1040.8 1073 54.1
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 4.1e-300 1035.0 1102 52.1
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 3.4e-299 1031.9 1110 53.3
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 2.3e-295 1019.2 935 57.2
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 6.7e-287 991.1 1130 50.5
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 1.3e-285 986.9 831 59.4
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 2.8e-277 959.1 1106 50.5
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 6.3e-277 958.0 938 55.5
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 3.2e-273 945.7 1108 49.2
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 1.3e-269 933.7 1100 49.1
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 5.6e-265 918.3 1136 46.7
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 1.6e-264 916.8 850 56.2
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 4.4e-262 908.7 1043 50.2
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 3.9e-258 895.6 1135 45.0
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 5.0e-258 895.2 1102 47.7
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 7.3e-257 891.3 1101 46.2
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.6e-256 890.2 838 54.7
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 5.2e-255 885.2 1121 47.4
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 9.8e-254 880.9 1166 45.5
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 1.4e-252 877.1 1094 46.9
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 1.2e-248 864.0 1107 45.3
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 2.3e-247 859.8 1082 46.5
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 1.7e-242 843.6 951 49.6
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 5.6e-241 838.6 936 49.6
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 1.3e-237 827.4 1058 46.6
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 7.1e-236 821.6 977 48.4
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 3.5e-235 819.3 1098 44.3
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 7.3e-233 811.6 1110 44.0
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 4.0e-231 805.8 1116 43.3
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 4.0e-231 805.8 851 50.8
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 9.0e-231 804.7 1106 42.9
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 2.6e-230 803.1 844 51.2
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 5.8e-230 802.0 1091 44.6
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 1.7e-229 800.4 1024 46.5
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 2.2e-229 800.0 845 51.7
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 3.8e-229 799.3 840 52.0
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 3.5e-227 792.7 1089 43.9
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 1.0e-226 791.2 722 57.9
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 1.7e-221 773.9 929 47.3
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 1.8e-218 763.8 1109 42.7
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 1.9e-217 760.4 1138 42.0
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.8e-215 753.8 1090 42.6
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 3.1e-215 753.1 880 49.7
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 1.5e-209 734.2 1015 42.7
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 2.5e-209 733.4 926 45.7
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 2.5e-209 733.4 878 49.2
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 1.3e-208 731.1 831 50.4
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 5.3e-207 725.7 1030 42.4
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 3.1e-199 699.9 1094 40.2
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 3.7e-192 676.4 1122 40.3
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 8.5e-181 638.6 640 53.8
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 7.4e-177 625.5 1037 38.8
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 1.3e-176 624.8 710 50.6
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 2.3e-170 604.0 934 41.0
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 5.3e-167 592.8 865 39.5
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 1.6e-163 581.3 1103 36.4
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 5.4e-159 566.2 871 39.4
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 2.6e-153 547.4 681 47.1
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 3.4e-153 547.0 853 39.9
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 5.4e-151 539.7 1110 34.9
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 2.6e-145 520.8 796 38.3
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 5.4e-143 513.1 513 53.6
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 9.2e-143 512.3 792 39.3
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 3.5e-142 510.4 512 52.9
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 1.7e-133 481.5 443 58.0
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 3.8e-120 437.2 671 41.6
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 6.5e-72 276.9 748 28.3
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 3.2e-71 274.6 504 35.7
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 2.6e-65 255.0 357 41.2
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 1.5e-63 249.2 186 66.7
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 4.2e-63 247.7 885 27.2
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 1.2e-49 203.0 322 38.2
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 7.7e-49 200.3 225 48.9
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 2.2e-48 198.7 219 49.3
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 2.5e-47 195.3 219 48.9
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.2e-46 193.0 432 36.1
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 2.1e-38 165.6 570 28.6
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 1.3e-27 129.8 101 59.4
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 3.2e-26 125.2 666 24.0
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 9.2e-26 123.6 114 55.3
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.6e-25 122.9 88 70.5
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 7.8e-25 120.6 88 68.2
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.0e-24 120.2 90 70.0
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 1.5e-23 116.3 129 52.7
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 4.0e-21 108.2 89 62.9
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 3.2e-18 98.6 718 21.9
MCO12G477 Micromonas commoda HOM05D009332 ORTHO05D011893 1.3e-16 93.2 596 23.7
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.9e-15 89.4 58 69.0
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 8.9e-13 80.5 69 62.3
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 7.6e-12 77.4 88 46.6
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 9.9e-12 77.0 251 31.1
Cre12.g489750 Chlamydomonas reinhardtii HOM05D015011 ORTHO05D017325 1.3e-11 76.6 669 21.8
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 9.2e-10 70.5 75 53.3
PRCOL_00001262 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.2e-09 70.1 193 29.0
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.6e-09 69.7 183 32.8
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 3.5e-09 68.6 200 28.5
MCO16G645 Micromonas commoda HOM05D014975 ORTHO05D016505 6.0e-09 67.8 173 31.2
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 3.9e-08 65.1 203 31.5
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 6.6e-08 64.3 126 32.5
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 2.5e-07 62.4 169 28.4
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 9.6e-07 60.5 175 28.6
AagrBONN_evm.TU.Sc2ySwM_228.2040 Anthoceros agrestis HOM05D015011 ORTHO05D017325 1.6e-06 59.7 277 23.1


User provided reference genes

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