Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001592 Sechium edule HOM05D003160 ORTHO05D010088 3.7e-106 388.3 201 100.0
Sed0027822 Sechium edule HOM05D003160 ORTHO05D010088 4.7e-85 318.2 209 83.7
Sed0027763 Sechium edule HOM05D003160 ORTHO05D010088 3.8e-79 298.5 216 77.3
MELO3C006001.2 Cucumis melo HOM05D003160 ORTHO05D010088 1.7e-58 229.9 221 61.5
ClCG05G000620 Citrullus lanatus HOM05D001628 ORTHO05D001568 2.8e-58 229.2 215 63.7
CsaV3_3G007840 Cucumis sativus L. HOM05D000126 ORTHO05D003017 6.0e-40 168.3 195 53.8
QL08p046202 Quercus lobata HOM05D003160 ORTHO05D010088 8.9e-28 127.9 227 39.6
QL08p046209 Quercus lobata HOM05D003160 ORTHO05D010088 2.6e-27 126.3 227 39.2
QL08p046215 Quercus lobata HOM05D003160 ORTHO05D010088 2.6e-27 126.3 227 39.2
Gohir.D12G117600 Gossypium hirsutum HOM05D003160 ORTHO05D010088 1.3e-26 124.0 230 39.6
Thecc.01G337400 Theobroma cacao HOM05D003160 ORTHO05D010088 1.7e-26 123.6 232 40.9
Gorai.008G127400 Gossypium raimondii HOM05D003160 ORTHO05D010088 2.2e-26 123.2 230 39.6
Ca_09526_v3 Cicer arietinum L. HOM05D003160 ORTHO05D010088 2.9e-26 122.9 191 41.9
Sopen05g028910 Solanum pennellii HOM05D003160 ORTHO05D010088 2.9e-26 122.9 227 38.8
CANSAT56G1121 Cannabis sativa HOM05D003160 ORTHO05D010088 1.1e-25 120.9 224 39.3
PGSC0003DMG400007007 Solanum tuberosum HOM05D003160 ORTHO05D010088 3.2e-25 119.4 224 39.7
Gohir.A12G114100 Gossypium hirsutum HOM05D003160 ORTHO05D010088 7.1e-25 118.2 230 38.7
Potri.014G102100 Populus trichocarpa HOM05D003160 ORTHO05D010088 9.2e-25 117.9 229 38.4
Nn1g00361 Nelumbo nucifera HOM05D000716 ORTHO05D004822 1.6e-24 117.1 222 36.9
Nitab4.5_0003865g0070 Nicotiana tabacum HOM05D003160 ORTHO05D010088 3.5e-24 115.9 223 41.3
Sabra14G0075100 Salix brachista HOM05D003160 ORTHO05D010088 3.5e-24 115.9 229 38.4
Solyc05g050500.1 Solanum lycopersicum HOM05D003160 ORTHO05D010088 3.5e-24 115.9 227 37.9
Manes.05G019500 Manihot esculenta HOM05D003160 ORTHO05D010088 1.0e-23 114.4 224 37.9
Glyma.19G257900 Glycine max HOM05D003160 ORTHO05D010088 2.3e-23 113.2 215 40.0
Lalb_Chr15g0076361 Lupinus albus HOM05D003160 ORTHO05D010088 3.0e-23 112.8 219 37.4
TWI59G0107 Tripterygium wilfordii HOM05D003160 ORTHO05D010088 3.0e-23 112.8 234 35.9
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 6.6e-23 111.7 235 39.1
Duzib138G0284 Durio zibethinus HOM05D003160 ORTHO05D010088 6.6e-23 111.7 233 36.1
Lj1g0008335 Lotus japonicus HOM05D003160 ORTHO05D010088 8.7e-23 111.3 233 37.3
Medtr7g117900 Medicago truncatula HOM05D003160 ORTHO05D010088 8.7e-23 111.3 218 39.0
TPR.G4697 Trifolium pratense HOM05D003160 ORTHO05D010088 1.9e-22 110.2 226 36.7
CAN.G360.9 Capsicum annuum HOM05D003160 ORTHO05D010088 2.5e-22 109.8 224 37.1
TAR374G0774 Trochodendron aralioides HOM05D003160 ORTHO05D010088 5.6e-22 108.6 230 35.7
Atru.chr5.726 Acer truncatum HOM05D003160 ORTHO05D010088 1.6e-21 107.1 240 32.9
VMungo0540G0853 Vigna mungo HOM05D003160 ORTHO05D010088 2.8e-21 106.3 208 38.0
Ciclev10021230m.g Citrus clementina HOM05D003160 ORTHO05D010088 6.2e-21 105.1 233 34.3
PSO384G0028 Papaver somniferum HOM05D003160 ORTHO05D010088 6.2e-21 105.1 233 33.9
Psat3g001520 Pisum sativum HOM05D003160 ORTHO05D010088 9.0e-20 101.3 129 42.6
Phvul.006G115400 Phaseolus vulgaris HOM05D003160 ORTHO05D010088 2.0e-19 100.1 211 36.5
Dinv34236 Davidia involucrata HOM05D003160 ORTHO05D010088 1.7e-18 97.1 200 40.5
CANSAT56G3603 Cannabis sativa HOM05D003160 ORTHO05D010088 2.2e-18 96.7 226 33.6
Aqoxy7G00032 Aquilegia oxysepala HOM05D003160 ORTHO05D010088 4.9e-18 95.5 229 32.8
MD01G1085700 Malus domestica HOM05D003160 ORTHO05D010088 1.4e-17 94.0 154 42.2
MBI12_g03929_MAGBIO Magnolia biondii HOM05D002361 ORTHO05D002843 4.2e-17 92.4 223 34.1
arahy.Tifrunner.gnm1.ann1.0W8RKK Arachis hypogaea HOM05D010811 ORTHO05D010088 4.6e-16 89.0 213 38.0
FAN01G1829 Fragaria x ananassa HOM05D003160 ORTHO05D010088 4.6e-16 89.0 181 38.7
Prupe.2G193500 Prunus persica HOM05D003160 ORTHO05D010088 4.6e-16 89.0 197 36.0
arahy.Tifrunner.gnm1.ann1.ZR3V1T Arachis hypogaea HOM05D010811 ORTHO05D010088 1.0e-15 87.8 208 37.5
RcHm_v2.0_Chr1g0360571 Rosa chinensis HOM05D003160 ORTHO05D010088 1.0e-15 87.8 180 37.8
FAN06G3527 Fragaria x ananassa HOM05D003160 ORTHO05D010088 1.7e-15 87.0 182 37.4
Nitab4.5_0000258g0330 Nicotiana tabacum HOM05D003160 ORTHO05D010088 1.7e-15 87.0 210 35.7
FvH4_7g17180 Fragaria vesca HOM05D003160 ORTHO05D010088 3.0e-15 86.3 182 36.8
FAN03G1832 Fragaria x ananassa HOM05D003160 ORTHO05D010088 1.6e-13 80.5 182 35.7
SalBow3G1544 Salvia bowleyana HOM05D003160 ORTHO05D010088 1.2e-11 74.3 235 31.1
SalBow3G2702 Salvia bowleyana HOM05D003160 ORTHO05D010088 1.2e-11 74.3 235 31.1
Cpa.g.sc96.69 Carica papaya HOM05D010811 ORTHO05D010088 2.2e-10 70.1 210 33.3
Nitab4.5_0000425g0240 Nicotiana tabacum HOM05D003160 ORTHO05D005967 2.2e-10 70.1 136 30.1
Nitab4.5_0006745g0030 Nicotiana tabacum HOM05D003160 ORTHO05D005967 2.2e-10 70.1 136 30.1
Solyc12g056830.1 Solanum lycopersicum HOM05D003160 ORTHO05D005967 6.4e-10 68.6 136 30.1
Aa31LG5G1040 Aethionema arabicum HOM05D010811 ORTHO05D010088 8.4e-10 68.2 181 37.0
Sopen12g029510 Solanum pennellii HOM05D003160 ORTHO05D005967 1.1e-09 67.8 94 35.1
CAN.G47.5 Capsicum annuum HOM05D003160 ORTHO05D005967 1.4e-09 67.4 136 29.4
SGA_v2.0_scaffold5G03046 Striga asiatica HOM05D003160 ORTHO05D010088 1.4e-09 67.4 183 31.1
CiPaw.11G007300 Carya illinoinensis HOM05D003160 ORTHO05D005967 1.9e-09 67.0 136 29.4
HanXRQChr10g0278581 Helianthus annuus HOM05D003160 ORTHO05D005967 2.4e-09 66.6 94 35.1
PGSC0003DMG400016959 Solanum tuberosum HOM05D003160 ORTHO05D005967 3.2e-09 66.2 136 29.4
Ca_26100_v3 Cicer arietinum L. HOM05D003160 ORTHO05D005967 4.2e-09 65.9 203 27.6
Migut.B01904 Erythranthe guttata HOM05D003160 ORTHO05D010088 5.4e-09 65.5 230 28.3
SEGI_07127 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 7.1e-09 65.1 99 31.3
SEGI_11516 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 7.1e-09 65.1 99 31.3
Dinv13072 Davidia involucrata HOM05D003160 ORTHO05D005967 1.2e-08 64.3 140 25.7
Lsat_1_v5_gn_6_101941 Lactuca sativa HOM05D003160 ORTHO05D005967 1.2e-08 64.3 136 30.1
Sc04g0010380 Simmondsia chinensis HOM05D003160 ORTHO05D005967 1.6e-08 63.9 175 28.0
HanXRQChr02g0043721 Helianthus annuus HOM05D003160 ORTHO05D005967 2.1e-08 63.5 137 29.9
CDE02G4562 Ceratophyllum demersum HOM05D003160 ORTHO05D005967 6.0e-08 62.0 134 26.9
Peaxi162Scf00160g01617 Petunia axillaris HOM05D003160 ORTHO05D005967 6.0e-08 62.0 94 30.9
VMungo1215G3266 Vigna mungo HOM05D003160 ORTHO05D005967 6.0e-08 62.0 91 34.1
AagrBONN_evm.TU.Sc2ySwM_362.1478 Anthoceros agrestis HOM05D003160 ORTHO05D005967 7.9e-08 61.6 138 26.8
RcHm_v2.0_Chr6g0272941 Rosa chinensis HOM05D003160 ORTHO05D005967 7.9e-08 61.6 92 33.7
SEGI_06406 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 7.9e-08 61.6 236 28.0
HanXRQChr13g0423141 Helianthus annuus HOM05D003160 ORTHO05D005967 1.0e-07 61.2 94 33.0
Nn2g14435 Nelumbo nucifera HOM05D003160 ORTHO05D005967 1.0e-07 61.2 121 28.1
Prupe.8G048900 Prunus persica HOM05D003160 ORTHO05D005967 1.0e-07 61.2 136 27.2
Lj7P497T13 Lonicera japonica HOM05D010811 ORTHO05D010088 1.3e-07 60.8 201 33.8
MD17G1003000 Malus domestica HOM05D003160 ORTHO05D005967 1.3e-07 60.8 149 26.2
SalBow7G2604 Salvia bowleyana HOM05D003160 ORTHO05D005967 1.3e-07 60.8 94 31.9
AUR62005671 Chenopodium quinoa HOM05D003160 ORTHO05D005967 1.8e-07 60.5 215 23.3
SGA_v2.0_scaffold315G48377 Striga asiatica HOM05D003160 ORTHO05D005967 1.8e-07 60.5 92 35.9
Cc10_g06080 Coffea canephora HOM05D003160 ORTHO05D005967 2.3e-07 60.1 94 30.9
Gohir.A01G040600 Gossypium hirsutum HOM05D003160 ORTHO05D005967 2.3e-07 60.1 187 26.7
Manes.02G188100 Manihot esculenta HOM05D003160 ORTHO05D005967 2.3e-07 60.1 92 30.4
Oeu001061.1 Olea europaea HOM05D003160 ORTHO05D005967 2.3e-07 60.1 94 31.9
TWI34G1175 Tripterygium wilfordii HOM05D003160 ORTHO05D005967 2.3e-07 60.1 91 31.9
HPP92_004308 Vanilla planifolia HOM05D003160 ORTHO05D005967 2.3e-07 60.1 94 29.8
AUR62028884 Chenopodium quinoa HOM05D003160 ORTHO05D005967 3.0e-07 59.7 215 22.3
Dinv44718 Davidia involucrata HOM05D003160 ORTHO05D005967 3.0e-07 59.7 92 29.3
Haze_07136 Corylus avellana HOM05D003160 ORTHO05D005967 3.9e-07 59.3 197 24.9
TAR381G0896 Trochodendron aralioides HOM05D003160 ORTHO05D005967 3.9e-07 59.3 198 26.3
CiPaw.12G043000 Carya illinoinensis HOM05D003160 ORTHO05D005967 5.1e-07 58.9 94 28.7
CsaV3_6G002740 Cucumis sativus L. HOM05D003160 ORTHO05D005967 5.1e-07 58.9 134 30.6
Lsat_1_v5_gn_1_4801 Lactuca sativa HOM05D003160 ORTHO05D005967 5.1e-07 58.9 94 30.9
MSTRG.22135 Avicennia marina HOM05D003160 ORTHO05D005967 6.7e-07 58.5 97 29.9
CSS0043683 Camellia sinensis var. sinensis HOM05D003160 ORTHO05D005967 6.7e-07 58.5 91 28.6
Migut.C00219 Erythranthe guttata HOM05D003160 ORTHO05D005967 6.7e-07 58.5 182 26.9
Eucgr.F04149 Eucalyptus grandis HOM05D003160 ORTHO05D005967 6.7e-07 58.5 203 26.6
Lj4A710G52 Lonicera japonica HOM05D003160 ORTHO05D005967 6.7e-07 58.5 91 30.8
Lj4P109T42 Lonicera japonica HOM05D003160 ORTHO05D005967 6.7e-07 58.5 94 27.7
Pp3c24_12520 Physcomitrium patens HOM05D003160 ORTHO05D005967 6.7e-07 58.5 136 29.4
PGR102G2401 Punica granatum HOM05D003160 ORTHO05D005967 6.7e-07 58.5 200 28.0
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 6.7e-07 58.5 140 27.1
FvH4_2g12490 Fragaria vesca HOM05D003160 ORTHO05D005967 8.7e-07 58.2 134 26.9
FAN15G0653 Fragaria x ananassa HOM05D003160 ORTHO05D005967 8.7e-07 58.2 134 26.9
FAN24G0582 Fragaria x ananassa HOM05D003160 ORTHO05D005967 8.7e-07 58.2 134 26.9
FAN27G2017 Fragaria x ananassa HOM05D003160 ORTHO05D005967 8.7e-07 58.2 134 26.9
MD10G1043200 Malus domestica HOM05D003160 ORTHO05D005967 8.7e-07 58.2 208 25.5
TWI34G0437 Tripterygium wilfordii HOM05D003160 ORTHO05D005967 8.7e-07 58.2 91 30.8
unitig_37.g13119 Utricularia gibba HOM05D003160 ORTHO05D005967 8.7e-07 58.2 99 29.3
CANSAT25G2288 Cannabis sativa HOM05D003160 ORTHO05D005967 1.1e-06 57.8 92 30.4
DCAR_002990 Daucus carota HOM05D003160 ORTHO05D000125 1.1e-06 57.8 62 43.5
Hma1.2p1_0276F.1_g111290 Hydrangea macrophylla HOM05D003160 ORTHO05D005967 1.1e-06 57.8 89 31.5
Potri.013G117000 Populus trichocarpa HOM05D003160 ORTHO05D005967 1.1e-06 57.8 188 27.7
Sc23g0001970 Simmondsia chinensis HOM05D003160 ORTHO05D010088 1.1e-06 57.8 185 30.8
Ah.02g131050 Amaranthus hybridus HOM05D003160 ORTHO05D005967 1.5e-06 57.4 183 23.0
MSTRG.24477 Avicennia marina HOM05D003160 ORTHO05D005967 1.5e-06 57.4 94 29.8
ClCG08G002530 Citrullus lanatus HOM05D003160 ORTHO05D005967 1.5e-06 57.4 134 28.4
MELO3C025005.2 Cucumis melo HOM05D003160 ORTHO05D005967 1.5e-06 57.4 92 30.4
Glyma.17G130100 Glycine max HOM05D003160 ORTHO05D005967 1.5e-06 57.4 97 29.9
Gorai.002G037600 Gossypium raimondii HOM05D003160 ORTHO05D005967 1.5e-06 57.4 90 28.9
Cfa018797 Carpinus fangiana HOM05D003160 ORTHO05D005967 1.9e-06 57.0 199 24.1
Mapoly0173s0013 Marchantia polymorpha HOM05D003160 ORTHO05D005967 1.9e-06 57.0 224 25.4
Rhsim07G0198600 Rhododendron simsii HOM05D003160 ORTHO05D005967 1.9e-06 57.0 91 33.0
Hund25486 Selenicereus undatus HOM05D003160 ORTHO05D005967 1.9e-06 57.0 136 26.5
THA.LOC104816203 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 1.9e-06 57.0 159 25.8
arahy.Tifrunner.gnm1.ann1.2I1I1C Arachis hypogaea HOM05D003160 ORTHO05D005967 2.5e-06 56.6 208 25.0
Glyma.05G048000 Glycine max HOM05D003160 ORTHO05D005967 2.5e-06 56.6 174 25.9
Sed0000690 Sechium edule HOM05D003160 ORTHO05D005967 2.5e-06 56.6 89 31.5
HPP92_022428 Vanilla planifolia HOM05D003160 ORTHO05D010088 2.5e-06 56.6 154 31.8
Gohir.D01G028200 Gossypium hirsutum HOM05D003160 ORTHO05D005967 3.3e-06 56.2 187 25.7
THA.LOC104806778 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 3.3e-06 56.2 136 27.2
TPR.G19210 Trifolium pratense HOM05D003160 ORTHO05D005967 3.3e-06 56.2 201 25.4
CARHR249440 Cardamine hirsuta HOM05D010811 ORTHO05D010088 4.3e-06 55.8 182 33.5
Ciclev10002351m.g Citrus clementina HOM05D003160 ORTHO05D005967 4.3e-06 55.8 91 28.6
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 4.3e-06 55.8 153 27.5
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 4.3e-06 55.8 94 31.9
Atru.chr13.1881 Acer truncatum HOM05D003160 ORTHO05D005967 5.6e-06 55.5 92 28.3
MBI05_g36578_MAGBIO Magnolia biondii HOM05D003160 ORTHO05D005967 5.6e-06 55.5 94 25.5
Medtr4g103330 Medicago truncatula HOM05D003160 ORTHO05D005967 5.6e-06 55.5 92 33.7
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 5.6e-06 55.5 185 24.3
EL10Ac6g13555 Beta vulgaris HOM05D003160 ORTHO05D005967 7.4e-06 55.1 137 25.5
Carub.0006s3593 Capsella rubella HOM05D010811 ORTHO05D010088 7.4e-06 55.1 111 38.7
Cpa.g.sc66.121 Carica papaya HOM05D003160 ORTHO05D005967 9.6e-06 54.7 185 27.0
Thecc.07G148800 Theobroma cacao HOM05D003160 ORTHO05D005967 9.6e-06 54.7 90 27.8
TAR625G0523 Trochodendron aralioides HOM05D003160 ORTHO05D005967 9.6e-06 54.7 138 23.9


User provided reference genes

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