Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 5.8e-198 694.1 372 100.0
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.3e-144 516.9 332 81.9
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.0e-141 507.3 330 79.1
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.1e-137 493.8 327 77.4
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.4e-114 417.2 323 69.3
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 2.0e-113 413.3 333 66.1
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 7.0e-111 404.8 307 72.3
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 2.7e-110 402.9 313 68.1
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.0e-109 401.0 328 65.9
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 8.6e-109 397.9 304 69.7
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.4e-106 390.6 300 67.7
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 4.0e-106 389.0 296 68.2
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 7.5e-105 384.8 316 65.8
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 2.2e-104 383.3 299 64.9
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 6.4e-104 381.7 316 65.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.4e-103 379.8 310 64.8
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.4e-103 379.8 325 68.6
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.2e-103 379.4 307 70.7
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 5.4e-103 378.6 307 63.5
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 9.2e-103 377.9 324 63.3
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.9e-102 375.2 332 60.8
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.7e-101 373.6 311 61.7
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 3.9e-101 372.5 301 66.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.9e-101 372.5 332 60.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 3.9e-101 372.5 324 65.7
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.9e-101 372.5 311 65.0
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.5e-100 370.5 309 63.8
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 3.3e-100 369.4 310 62.3
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 9.5e-100 367.9 332 60.8
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 9.5e-100 367.9 301 63.1
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 9.5e-100 367.9 300 64.3
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 8.0e-99 364.8 327 61.2
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.0e-98 362.5 357 57.4
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 5.2e-98 362.1 263 73.4
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 6.8e-98 361.7 321 61.7
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 6.8e-98 361.7 314 61.8
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 8.9e-98 361.3 277 72.2
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.6e-97 359.8 298 62.1
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.6e-97 359.8 323 60.7
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 5.8e-97 358.6 268 69.8
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 7.5e-97 358.2 305 64.3
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.7e-96 357.1 301 63.1
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 2.2e-96 356.7 285 64.9
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 3.7e-96 355.9 326 60.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 4.9e-96 355.5 294 69.4
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 4.9e-96 355.5 326 61.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.1e-95 354.4 298 61.4
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.1e-95 354.4 303 62.0
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.4e-95 354.0 306 66.0
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.9e-95 353.6 326 61.3
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.9e-95 353.6 336 57.4
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 5.4e-95 352.1 224 77.7
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 1.6e-94 350.5 219 78.5
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.0e-94 350.1 364 55.8
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 3.5e-94 349.4 326 57.7
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 4.6e-94 349.0 299 62.9
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.0e-93 347.8 326 63.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.0e-93 347.8 272 65.8
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 2.3e-93 346.7 330 56.7
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 4.3e-92 342.4 335 60.9
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 9.5e-92 341.3 257 68.9
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.8e-91 339.7 347 58.5
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 4.0e-90 335.9 298 60.4
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 8.9e-90 334.7 322 62.1
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.5e-89 334.0 316 58.9
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.0e-89 333.6 300 64.0
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 2.6e-89 333.2 306 64.7
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 9.8e-89 331.3 337 57.0
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.9e-88 329.7 215 72.6
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 6.4e-88 328.6 292 67.1
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 6.4e-88 328.6 252 68.7
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.9e-87 327.0 320 60.6
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.1e-87 325.9 289 65.4
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 4.1e-87 325.9 298 61.4
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 4.1e-87 325.9 328 57.9
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 5.4e-87 325.5 299 65.6
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 5.4e-87 325.5 318 60.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.2e-86 324.3 295 58.6
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.2e-86 324.3 217 71.9
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.1e-86 323.6 291 65.3
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 2.1e-86 323.6 318 62.6
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 7.8e-86 321.6 321 54.8
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.3e-85 320.9 215 71.6
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.7e-85 320.5 325 58.8
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 6.6e-85 318.5 267 63.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 1.1e-84 317.8 317 62.8
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 1.1e-84 317.8 317 62.8
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.5e-84 316.6 274 64.2
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.5e-84 316.6 328 61.0
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.5e-84 316.6 328 61.0
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 7.3e-84 315.1 317 61.8
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 9.5e-84 314.7 324 58.6
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 2.8e-83 313.2 324 58.3
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 3.6e-83 312.8 317 62.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 6.2e-83 312.0 317 62.5
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 8.1e-83 311.6 317 62.1
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.3e-82 310.1 328 59.8
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.3e-82 310.1 364 48.6
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 6.8e-82 308.5 324 57.7
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 6.8e-82 308.5 261 63.6
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.6e-81 306.6 314 54.8
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.1e-76 291.2 322 58.1
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 7.3e-76 288.5 320 57.5
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 7.3e-76 288.5 239 61.5
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 4.7e-75 285.8 305 58.4
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.4e-71 274.2 325 52.0
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 3.2e-71 273.1 233 57.9
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.2e-71 272.7 192 71.4
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.9e-69 266.2 263 62.4
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 3.3e-68 263.1 274 51.8
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.0e-61 241.5 284 51.8
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.5e-60 237.7 295 45.8
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 9.0e-58 228.4 133 83.5
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.6e-54 216.1 271 45.0
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.9e-53 213.0 339 39.8
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 6.2e-51 205.7 354 43.5
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 3.1e-50 203.4 266 43.2
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.4e-47 194.5 135 69.6
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 2.7e-46 190.3 137 70.8
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.7e-40 171.0 177 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.8e-37 161.0 258 37.6
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 8.7e-37 158.7 95 80.0
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 8.7e-37 158.7 97 78.4
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.8e-34 151.0 177 44.1
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.3e-34 149.4 303 33.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 7.7e-25 119.0 221 29.4
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 8.5e-24 115.5 70 77.1
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 3.2e-23 113.6 173 48.6
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.2e-22 111.7 120 55.0
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 4.8e-19 99.8 294 33.3
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.6e-17 94.0 104 49.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 8.0e-14 82.4 188 29.3
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.7e-11 74.7 184 28.3
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.1e-10 70.5 63 61.9
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 3.8e-08 63.5 72 50.0
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 3.2e-07 60.5 98 30.6


User provided reference genes

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