Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 4.5e-283 977.2 493 100.0
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 2.8e-256 888.3 494 90.5
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 1.9e-209 732.6 517 71.6
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.6e-208 729.6 513 72.3
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 2.8e-208 728.8 518 71.2
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 2.4e-207 725.7 517 70.8
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 5.3e-207 724.5 421 87.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 6.9e-207 724.2 514 71.2
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 3.4e-206 721.8 527 69.4
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 4.5e-206 721.5 527 69.3
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 5.9e-206 721.1 514 70.2
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.3e-205 719.9 514 69.6
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 2.9e-205 718.8 514 70.4
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 3.8e-205 718.4 514 70.6
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.4e-204 716.5 516 70.0
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 2.5e-204 715.7 528 68.6
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 5.5e-204 714.5 514 70.2
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 3.6e-203 711.8 514 69.5
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.8e-202 709.5 527 69.1
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 2.3e-202 709.1 526 69.2
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 3.0e-202 708.8 516 69.8
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 5.1e-202 708.0 527 68.7
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 5.1e-202 708.0 515 69.1
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 6.7e-202 707.6 511 70.6
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 6.7e-202 707.6 514 69.5
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 8.8e-202 707.2 513 68.6
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.5e-201 706.4 513 69.8
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 1.9e-201 706.1 528 67.8
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 1.9e-201 706.1 510 68.0
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 4.3e-201 704.9 527 68.7
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 7.4e-201 704.1 529 67.9
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 9.7e-201 703.7 507 69.2
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 2.2e-200 702.6 515 68.7
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 2.8e-200 702.2 512 68.4
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.4e-199 699.9 514 68.9
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.8e-199 699.5 523 67.9
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 2.4e-199 699.1 514 68.9
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 5.3e-199 698.0 525 67.8
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 1.1e-196 690.3 512 69.1
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 3.2e-196 688.7 527 66.2
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 4.2e-196 688.3 514 68.7
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 9.4e-196 687.2 504 68.8
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.2e-195 686.8 514 67.5
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 1.2e-195 686.8 527 67.2
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 6.1e-195 684.5 515 66.0
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.4e-194 683.3 515 66.6
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 2.3e-194 682.6 529 66.0
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 5.1e-194 681.4 509 68.4
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 1.5e-193 679.9 557 62.8
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 1.5e-193 679.9 504 67.9
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.4e-193 678.3 524 65.6
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 9.7e-193 677.2 511 66.7
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 9.7e-193 677.2 511 66.7
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.7e-192 676.4 515 67.0
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 6.3e-192 674.5 566 62.2
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 3.1e-191 672.2 509 66.2
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 5.3e-191 671.4 528 64.4
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.2e-190 670.2 512 64.3
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 2.0e-190 669.5 509 66.4
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 4.5e-190 668.3 534 63.7
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 2.9e-189 665.6 509 65.4
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 3.8e-189 665.2 504 67.3
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 5.0e-189 664.8 511 66.1
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.5e-188 662.5 512 64.3
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 7.2e-188 661.0 509 66.0
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 7.2e-188 661.0 515 64.9
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.7e-187 659.1 509 65.4
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 8.0e-187 657.5 509 65.0
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 8.0e-187 657.5 509 65.6
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.4e-186 656.8 509 65.0
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 2.3e-186 656.0 509 64.8
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.5e-185 653.3 514 65.4
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 2.0e-185 652.9 457 71.8
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.7e-184 649.8 528 63.3
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.8e-184 649.0 504 64.3
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 3.7e-184 648.7 538 61.5
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.8e-183 646.4 520 62.7
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.0e-182 642.9 520 61.7
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 2.6e-182 642.5 529 62.4
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 2.6e-182 642.5 510 64.7
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 2.6e-182 642.5 493 67.1
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 2.2e-181 639.4 499 64.9
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 3.8e-181 638.6 432 78.2
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 5.0e-181 638.3 507 62.7
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 5.0e-181 638.3 506 63.6
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 8.5e-181 637.5 525 62.7
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 2.5e-180 636.0 486 66.3
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 4.7e-179 631.7 546 60.6
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 6.1e-179 631.3 507 61.9
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 2.0e-177 626.3 505 61.6
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 3.3e-177 625.5 509 62.3
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 2.8e-176 622.5 509 62.1
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.8e-176 621.7 500 63.2
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.8e-176 621.7 502 62.7
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 4.1e-175 618.6 509 62.7
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 8.5e-173 610.9 514 61.3
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 1.5e-172 610.1 523 59.5
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 2.5e-172 609.4 494 60.7
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 9.4e-172 607.4 514 60.7
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.8e-168 595.1 516 60.5
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 1.6e-166 590.1 499 60.1
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 1.6e-166 590.1 496 60.7
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.2e-163 580.5 514 60.3
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 2.3e-162 576.2 517 58.0
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 4.0e-162 575.5 524 57.3
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.0e-161 573.2 431 66.8
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 4.5e-158 562.0 439 65.1
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 2.5e-156 556.2 511 57.5
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 4.0e-154 548.9 430 64.7
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 2.0e-150 536.6 483 58.6
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 4.0e-130 469.2 355 68.2
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 5.8e-121 438.7 515 46.2
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 8.7e-117 424.9 403 55.6
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 2.5e-116 423.3 530 44.3
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 6.4e-112 408.7 492 43.7
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 1.3e-109 401.0 388 53.4
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 1.3e-96 357.8 471 41.8
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 4.1e-90 336.3 469 44.3
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.4e-58 231.5 139 80.6
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 8.6e-48 195.7 418 35.9
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.2e-41 175.3 123 67.5
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 6.8e-37 159.5 137 64.2
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 6.6e-32 142.9 239 38.9
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 7.1e-26 122.9 72 87.5
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 6.0e-25 119.8 79 74.7
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.9e-23 114.8 76 72.4
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 3.3e-23 114.0 71 76.1
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-21 107.8 153 37.3
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 4.0e-21 107.1 98 56.1
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 8.9e-21 105.9 104 56.7
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 6.2e-14 83.2 247 28.7
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 6.4e-11 73.2 116 39.7
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-10 69.7 53 52.8
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 1.6e-06 58.5 46 65.2


User provided reference genes

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