Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 0.0e+00 1287.7 663 100.0
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 0.0e+00 1151.3 664 89.6
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 0.0e+00 1138.6 663 88.5
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 0.0e+00 1132.5 663 87.9
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.8e-266 922.5 666 71.0
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 3.0e-266 921.8 667 70.0
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.2e-266 921.0 666 71.0
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 2.0e-265 919.1 666 71.2
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 2.2e-264 915.6 658 71.3
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.1e-263 913.3 664 71.1
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.4e-263 912.9 660 70.8
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.8e-263 912.5 654 72.2
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.4e-263 911.0 666 70.3
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.0e-261 906.7 654 71.1
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.9e-260 902.5 659 69.8
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 2.5e-260 902.1 665 69.2
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 2.5e-260 902.1 665 69.0
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 5.6e-260 901.0 657 70.2
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 1.2e-259 899.8 660 69.5
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 2.1e-259 899.0 657 71.1
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 2.8e-259 898.7 656 69.8
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 3.6e-259 898.3 663 70.1
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 3.6e-259 898.3 656 70.3
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 3.6e-259 898.3 653 71.2
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 8.0e-259 897.1 661 69.6
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 2.3e-258 895.6 654 71.1
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.0e-258 894.8 657 69.6
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 6.8e-258 894.0 657 70.8
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 5.7e-257 891.0 650 69.7
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 2.2e-256 889.0 656 70.6
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.9e-256 888.6 659 69.2
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.9e-256 887.9 644 70.5
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 6.4e-256 887.5 659 68.9
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 2.4e-255 885.6 662 68.6
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.7e-253 879.4 650 69.7
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 3.0e-253 878.6 665 68.6
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 5.6e-252 874.4 666 67.4
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.1e-251 872.5 660 68.5
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 4.0e-250 868.2 653 68.3
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 8.9e-250 867.1 666 67.3
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.2e-249 866.7 653 68.3
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.5e-249 866.3 648 68.7
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.5e-249 866.3 654 68.3
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 9.8e-249 863.6 648 68.4
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.3e-248 863.2 658 67.8
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.9e-248 862.1 665 66.3
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 2.4e-247 859.0 653 68.3
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.4e-247 859.0 654 67.4
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 3.2e-247 858.6 690 65.5
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 2.0e-246 855.9 647 68.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 2.7e-246 855.5 654 67.0
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 6.0e-246 854.4 649 68.0
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 1.0e-245 853.6 657 67.6
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 5.6e-244 847.8 662 66.5
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 5.6e-244 847.8 649 68.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.2e-243 846.7 656 66.8
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 2.8e-243 845.5 661 65.8
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.8e-243 845.5 649 67.2
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.1e-242 843.6 687 65.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 8.9e-242 840.5 687 64.9
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 8.9e-242 840.5 652 66.9
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.2e-240 835.9 648 66.4
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 6.4e-240 834.3 660 66.8
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.4e-239 833.2 656 66.5
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 7.1e-239 830.9 659 65.4
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 4.7e-235 818.1 613 71.0
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.1e-234 815.5 653 65.1
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.5e-233 813.1 663 64.6
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 9.9e-233 810.4 688 63.8
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.6e-230 803.1 586 71.3
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.0e-230 801.2 654 64.2
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.3e-229 800.0 645 64.8
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 5.1e-229 798.1 640 65.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 6.6e-229 797.7 727 60.7
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 4.3e-228 795.0 656 63.6
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 7.3e-228 794.3 653 63.1
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 5.2e-226 788.1 604 68.2
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 9.9e-225 783.9 648 63.7
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.2e-224 782.7 618 65.7
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.4e-223 780.0 679 62.7
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.1e-222 776.2 580 68.8
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 9.6e-220 767.3 653 63.4
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.3e-219 766.9 595 67.4
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 9.0e-210 734.2 655 59.8
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 3.2e-207 725.7 648 61.1
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 3.2e-207 725.7 680 56.9
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 6.0e-206 721.5 867 49.6
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 3.1e-202 709.1 696 57.2
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 5.5e-191 671.8 655 55.1
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 1.1e-186 657.5 848 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.2e-183 645.6 656 54.0
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.4e-180 635.6 486 67.9
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 4.1e-178 629.0 504 64.7
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.2e-175 619.4 574 58.0
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 4.1e-170 602.4 475 64.8
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 8.8e-165 584.7 574 55.9
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 4.4e-156 555.8 493 60.4
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.7e-155 553.9 616 51.9
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.7e-139 500.7 437 60.6
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.9e-127 460.7 429 56.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 2.3e-104 384.0 463 48.8
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.5e-103 380.6 346 59.2
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.6e-78 298.1 434 42.9
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 8.2e-78 295.8 239 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.3e-77 293.1 314 50.0
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 1.1e-71 275.4 201 71.1
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.9e-69 266.2 205 67.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 9.1e-61 239.2 181 65.7
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.9e-59 234.2 285 49.8
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 8.5e-59 232.6 177 63.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.6e-57 228.4 382 38.5
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 6.1e-57 226.5 249 53.4
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 3.6e-49 200.7 133 77.4
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.8e-38 164.5 145 60.7
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 6.3e-38 163.3 169 55.6
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 3.1e-37 161.0 138 62.3
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-37 159.5 427 29.5
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.7e-35 155.2 93 80.6
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.7e-35 155.2 103 72.8
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.0e-31 141.7 92 73.9
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 2.2e-30 138.3 88 75.0
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 1.6e-28 132.1 84 76.2
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.9e-26 125.2 90 66.7
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-26 125.2 96 63.5
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 7.3e-26 123.2 79 77.2
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 3.1e-24 117.9 171 40.4
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 6.8e-24 116.7 167 41.9
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 4.4e-23 114.0 83 69.9
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.3e-22 112.5 84 67.9
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.3e-22 112.5 100 62.0
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 7.8e-20 103.2 135 48.1
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.1e-18 99.4 166 38.0
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.6e-17 95.5 90 58.9
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.0e-16 90.9 55 80.0
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.5e-15 89.0 71 62.0
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 3.4e-15 87.8 66 62.1
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 6.4e-14 83.6 61 65.6
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-10 72.4 56 58.9
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 7.3e-10 70.1 50 64.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 7.3e-10 70.1 50 64.0
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 8.1e-09 66.6 65 44.6
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.8e-08 65.5 50 60.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 4.4e-07 60.8 92 44.6
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 8.3e-06 56.6 49 63.3


User provided reference genes

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