Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 7.3e-278 959.9 479 100.0
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 3.0e-231 805.1 456 86.8
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 3.5e-224 781.6 461 83.1
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 6.1e-224 780.8 461 82.9
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 3.9e-215 751.5 509 74.9
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 8.5e-210 733.8 460 77.2
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 1.6e-208 729.6 467 76.0
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 3.6e-208 728.4 457 77.0
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 6.1e-208 727.6 462 76.0
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 6.1e-208 727.6 462 76.8
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 1.8e-207 726.1 467 76.0
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 1.8e-207 726.1 462 76.0
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 3.0e-207 725.3 457 76.1
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 3.0e-207 725.3 462 76.0
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 5.1e-207 724.5 454 76.4
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 1.1e-206 723.4 467 76.0
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 2.6e-206 722.2 461 76.4
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 7.4e-206 720.7 461 76.6
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 1.7e-205 719.5 468 75.2
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 4.8e-205 718.0 462 75.3
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 6.3e-205 717.6 458 76.6
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 8.2e-205 717.2 462 75.3
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 1.4e-204 716.5 462 75.5
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 2.4e-204 715.7 460 75.9
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 5.3e-204 714.5 462 75.3
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 1.5e-203 713.0 462 75.3
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 2.0e-203 712.6 462 74.5
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 3.5e-203 711.8 489 72.0
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 4.5e-203 711.4 467 74.9
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 1.3e-202 709.9 461 74.8
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 1.7e-202 709.5 454 76.2
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 2.2e-202 709.1 460 75.2
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 2.2e-202 709.1 460 75.2
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 3.8e-202 708.4 463 74.9
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 6.5e-202 707.6 462 74.5
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 2.5e-201 705.7 463 74.1
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 3.2e-201 705.3 472 73.7
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 7.2e-201 704.1 462 73.8
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 9.4e-201 703.7 467 73.2
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 1.6e-200 703.0 465 74.2
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 1.6e-200 703.0 465 74.2
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 1.6e-200 703.0 466 76.2
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 4.7e-200 701.4 467 73.0
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 8.0e-200 700.7 461 73.8
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 1.8e-199 699.5 462 74.0
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 5.2e-199 698.0 454 76.0
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 8.8e-199 697.2 463 73.4
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 1.1e-198 696.8 461 73.8
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 5.7e-198 694.5 461 72.7
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 9.7e-198 693.7 462 73.8
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 1.3e-197 693.3 460 72.8
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 3.7e-197 691.8 458 73.1
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 4.8e-197 691.4 460 73.0
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 2.4e-196 689.1 466 72.5
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 2.0e-195 686.0 461 73.8
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 3.5e-195 685.3 462 71.9
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 4.5e-195 684.9 462 72.5
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 4.5e-195 684.9 464 72.6
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 1.7e-194 682.9 454 72.5
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 2.9e-194 682.2 464 71.6
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 1.5e-193 679.9 454 73.3
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 2.5e-193 679.1 464 71.1
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 3.2e-193 678.7 462 71.6
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 5.5e-193 677.9 464 71.1
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 1.6e-192 676.4 464 71.3
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 2.7e-192 675.6 451 72.1
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 4.7e-192 674.9 462 71.6
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 2.3e-191 672.5 454 70.9
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 3.0e-191 672.2 462 71.2
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 1.5e-190 669.8 454 72.0
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.0e-190 669.5 459 71.0
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 4.4e-190 668.3 463 71.7
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 5.7e-190 667.9 462 71.0
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 7.5e-190 667.5 462 71.2
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 2.2e-189 666.0 462 71.0
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 2.2e-189 666.0 454 70.0
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 3.7e-189 665.2 460 70.9
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 4.8e-189 664.8 465 70.3
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 1.8e-188 662.9 458 70.1
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 4.1e-188 661.8 473 67.4
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 5.4e-188 661.4 460 70.4
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 9.1e-188 660.6 460 70.7
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 9.1e-188 660.6 462 70.3
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 1.6e-187 659.8 454 70.0
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 3.5e-187 658.7 463 69.5
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 5.9e-187 657.9 461 70.3
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 7.7e-187 657.5 455 69.5
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 1.3e-186 656.8 461 70.3
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.9e-186 655.6 464 69.6
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 3.8e-186 655.2 485 67.4
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 2.7e-184 649.0 515 64.5
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 8.0e-184 647.5 479 67.0
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 4.0e-183 645.2 433 72.7
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 1.2e-182 643.7 481 67.4
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 2.3e-178 629.4 454 67.2
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 3.0e-175 619.0 492 63.0
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 4.6e-171 605.1 463 65.9
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 2.2e-165 586.3 454 63.7
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 1.9e-164 583.2 423 67.8
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 1.1e-161 573.9 498 60.8
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 3.6e-160 568.9 382 73.3
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 7.1e-156 554.7 461 61.0
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.7e-154 550.1 477 58.3
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 3.6e-152 542.3 338 78.1
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 4.1e-148 528.9 467 57.6
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.1e-144 516.5 461 57.7
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 2.6e-142 509.6 417 61.4
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 7.8e-139 498.0 311 76.5
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 1.1e-137 494.2 464 55.0
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 3.3e-137 492.7 325 73.2
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.6e-136 490.3 456 56.4
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.1e-123 446.8 334 65.6
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.1e-123 446.8 399 58.1
PRCOL_00003473 Prasinoderma coloniale HOM05D004789 ORTHO05D006078 4.0e-119 432.6 497 48.7
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 8.2e-112 408.3 273 71.8
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 1.4e-111 407.5 257 77.4
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 1.1e-108 397.9 272 68.4
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 1.2e-107 394.4 331 62.2
MCO11G683 Micromonas commoda HOM05D004789 ORTHO05D006078 1.4e-103 380.9 485 46.0
FAN14G5139 Fragaria x ananassa HOM05D004789 ORTHO05D006078 7.9e-99 365.2 254 70.1
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 1.8e-98 364.0 712 34.6
Nn1g09737 Nelumbo nucifera HOM05D004789 ORTHO05D006078 2.5e-97 360.1 223 78.9
Cpa.g.sc2508.1 Carica papaya HOM05D004789 ORTHO05D006078 7.7e-94 348.6 216 76.4
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 4.4e-89 332.8 330 52.7
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 1.8e-87 327.4 460 42.4
Lsat_1_v5_gn_7_32541 Lactuca sativa HOM05D004789 ORTHO05D006078 1.5e-84 317.8 247 64.8
SEGI_29409 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 4.2e-84 316.2 271 57.9
SEGI_33759 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 2.4e-79 300.4 216 66.7
Nn1g09776 Nelumbo nucifera HOM05D004789 ORTHO05D006078 7.2e-76 288.9 211 66.4
Cpa.g.sc39.15 Carica papaya HOM05D004789 ORTHO05D006078 1.2e-62 245.0 165 73.3
SEGI_15354 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.5e-49 201.4 168 60.7
Actinidia39978 Actinidia chinensis HOM05D004789 ORTHO05D006078 4.6e-38 163.3 127 66.9
Hund24180 Selenicereus undatus HOM05D004789 ORTHO05D006078 2.5e-36 157.5 253 38.7
Hund01346 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.4e-34 151.8 109 64.2
Hund01450 Selenicereus undatus HOM05D004789 ORTHO05D006078 5.2e-34 149.8 140 52.1
Hund01197 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.2e-33 148.7 248 38.3
ECA236G3464 Erigeron canadensis HOM05D004789 ORTHO05D006078 1.7e-32 144.8 120 62.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-28 132.1 265 31.3
Cpa.g.sc39.16 Carica papaya HOM05D004789 ORTHO05D006078 1.6e-27 128.3 79 78.5
SalBow1G4379 Salvia bowleyana HOM05D004789 ORTHO05D006078 3.1e-26 124.0 80 73.8
SEGI_24407 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 6.9e-18 96.3 98 45.9
SEGI_07080 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.2e-17 95.5 75 58.7
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 4.5e-17 93.6 284 29.6
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 1.9e-15 88.2 282 27.3
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 7.1e-15 86.3 237 29.1
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 3.0e-13 80.9 251 28.3
Hma1.2p1_0199F.1_g085710 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 9.6e-12 75.9 59 57.6
Hund26061 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.8e-10 71.6 67 55.2
Sopen01g035780 Solanum pennellii HOM05D004789 ORTHO05D051096 2.4e-10 71.2 56 73.2
Solyc01g089930.2 Solanum lycopersicum HOM05D004789 ORTHO05D051096 3.1e-10 70.9 56 73.2
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 1.5e-09 68.6 274 27.4
Hund12586 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.4e-09 67.4 84 42.9
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 2.2e-08 64.7 276 23.6
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 4.9e-08 63.5 273 23.1
Sopen01g029920 Solanum pennellii HOM05D004789 ORTHO05D393610 6.4e-08 63.2 37 81.1
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 1.9e-07 61.6 260 22.3
Peaxi162Scf00020g00235 Petunia axillaris HOM05D005010 ORTHO05D006065 1.9e-07 61.6 272 22.1
Solyc01g094230.4 Solanum lycopersicum HOM05D004789 ORTHO05D390785 4.2e-07 60.5 43 69.8
VMungo0331G1782 Vigna mungo HOM05D005010 ORTHO05D006065 7.1e-07 59.7 273 20.1
SEGI_28254 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.2e-06 58.9 101 35.6
Medtr4g119220 Medicago truncatula HOM05D005010 ORTHO05D006065 1.6e-06 58.5 280 22.9
ClCG06G003790 Citrullus lanatus HOM05D005010 ORTHO05D006065 6.0e-06 56.6 270 20.4
MELO3C021216.2 Cucumis melo HOM05D005010 ORTHO05D006065 6.0e-06 56.6 272 20.6
MD02G1227600 Malus domestica HOM05D005010 ORTHO05D006065 6.0e-06 56.6 211 22.7
CDE05G2962 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 7.9e-06 56.2 34 76.5


User provided reference genes

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