Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 4.4e-147 524.6 269 100.0
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 3.5e-120 435.3 277 85.6
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 6.2e-117 424.5 269 83.6
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 5.1e-103 378.3 203 93.1
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 1.5e-102 376.7 275 73.5
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.6e-101 373.2 274 72.6
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.4e-100 370.2 272 73.9
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 3.1e-100 369.0 227 81.5
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 5.3e-100 368.2 275 71.6
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 6.9e-100 367.9 277 71.5
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.5e-99 366.7 271 72.7
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.6e-99 365.9 272 72.8
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 3.4e-99 365.5 272 72.8
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 9.9e-99 364.0 279 71.0
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.3e-98 363.6 224 82.6
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 2.2e-98 362.8 266 71.1
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 2.2e-98 362.8 271 72.0
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 2.9e-98 362.5 275 71.6
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 3.8e-98 362.1 283 70.0
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 2.4e-97 359.4 306 65.4
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 5.4e-97 358.2 272 71.3
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 2.7e-96 355.9 234 77.4
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 2.7e-96 355.9 274 71.2
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 3.0e-95 352.4 237 77.2
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 5.1e-95 351.7 275 69.8
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.9e-94 349.7 245 75.1
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 2.5e-94 349.4 223 79.8
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 3.3e-94 349.0 271 68.6
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 3.3e-94 349.0 221 80.5
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 2.1e-93 346.3 219 79.0
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 3.6e-93 345.5 251 73.3
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.4e-92 343.6 220 78.2
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 1.8e-92 343.2 281 69.0
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 3.1e-92 342.4 272 69.5
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 5.3e-92 341.7 217 79.3
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 9.0e-92 340.9 220 77.3
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.2e-91 340.5 222 76.6
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.2e-91 340.5 205 82.4
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 2.0e-91 339.7 216 79.2
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 2.6e-91 339.3 229 76.9
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 2.6e-91 339.3 223 78.0
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.5e-91 338.6 222 76.6
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 9.9e-91 337.4 276 69.2
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 9.9e-91 337.4 266 67.7
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 9.9e-91 337.4 237 73.4
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.3e-90 337.0 275 65.8
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 1.3e-90 337.0 222 76.1
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.2e-90 336.3 224 76.3
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 3.8e-90 335.5 219 77.6
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 6.4e-90 334.7 267 68.2
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 6.4e-90 334.7 218 79.8
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.4e-89 333.6 261 66.7
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 2.4e-89 332.8 274 68.2
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 2.4e-89 332.8 222 77.0
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 3.2e-89 332.4 217 75.6
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 4.2e-89 332.0 273 67.0
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 4.2e-89 332.0 236 72.0
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 5.5e-89 331.6 242 71.9
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 7.1e-89 331.3 273 65.9
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 9.3e-89 330.9 217 75.1
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 9.3e-89 330.9 217 77.4
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.2e-88 330.5 215 77.7
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.5e-88 328.9 249 69.5
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 4.6e-88 328.6 207 80.2
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 6.0e-88 328.2 249 69.1
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.0e-87 327.4 217 75.6
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.3e-87 327.0 217 77.0
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.3e-87 327.0 224 75.9
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 2.3e-87 326.2 271 66.4
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 3.9e-87 325.5 280 63.2
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 3.9e-87 325.5 224 75.4
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 6.7e-87 324.7 208 77.9
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 6.7e-87 324.7 298 62.1
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 8.7e-87 324.3 224 75.0
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 1.5e-86 323.6 225 75.6
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 4.3e-86 322.0 221 72.9
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 7.4e-86 321.2 281 62.3
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 9.6e-86 320.9 273 65.2
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.6e-85 320.1 237 69.6
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 3.7e-85 318.9 235 71.9
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.1e-84 317.4 278 60.8
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 1.8e-84 316.6 254 66.1
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 2.4e-84 316.2 275 63.6
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 3.1e-84 315.8 223 72.6
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 3.1e-84 315.8 223 72.6
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 3.1e-84 315.8 271 63.8
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 4.0e-84 315.5 266 65.4
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 5.3e-84 315.1 221 71.9
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.3e-84 315.1 275 61.5
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 4.5e-83 312.0 279 62.0
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 4.5e-83 312.0 217 71.0
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 5.8e-83 311.6 271 63.8
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 7.6e-83 311.2 280 63.2
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.0e-82 310.8 222 72.1
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 1.0e-82 310.8 260 65.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 1.3e-82 310.5 223 71.3
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 2.2e-82 309.7 187 80.7
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 8.4e-82 307.8 204 75.5
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 8.4e-82 307.8 177 84.2
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 4.2e-81 305.4 265 65.3
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 5.5e-81 305.1 226 69.9
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 5.5e-81 305.1 215 73.5
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.6e-80 302.0 216 71.3
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.8e-79 300.1 216 71.8
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 4.8e-77 292.0 214 68.7
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 3.8e-74 282.3 240 64.2
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.9e-73 280.0 211 66.4
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.1e-70 270.8 180 72.2
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 3.1e-68 262.7 205 68.8
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 4.5e-67 258.8 180 70.0
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 9.1e-60 234.6 174 63.2
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 2.9e-58 229.6 190 58.9
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 9.4e-49 198.0 127 75.6
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.6e-48 196.1 114 86.0
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.3e-46 189.5 149 65.8
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 3.8e-42 176.0 206 45.6
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 3.4e-38 162.9 212 45.8
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.9e-25 120.6 187 37.4
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.2e-19 101.3 75 72.0
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.3e-18 97.8 92 59.8
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.8e-16 90.1 56 76.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 7.0e-12 75.5 61 60.7
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.1e-07 61.6 173 25.4
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.8e-07 60.8 195 27.2
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 2.3e-07 60.5 173 27.7
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 4.0e-07 59.7 194 26.3
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 5.2e-07 59.3 176 26.7
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 5.2e-07 59.3 188 27.1
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 6.8e-07 58.9 265 25.7
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 1.2e-06 58.2 198 25.3
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.2e-06 58.2 115 38.3
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 1.5e-06 57.8 173 24.9
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 1.5e-06 57.8 173 24.9
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 2.0e-06 57.4 173 24.3
Thecc.10G052300 Theobroma cacao HOM05D002933 ORTHO05D009221 3.4e-06 56.6 228 25.0
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 4.4e-06 56.2 174 26.4
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 4.4e-06 56.2 226 22.6
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 7.5e-06 55.5 176 25.6
Gohir.D04G061800 Gossypium hirsutum HOM05D002933 ORTHO05D009221 7.5e-06 55.5 266 22.9
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 7.5e-06 55.5 226 22.6
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 9.9e-06 55.1 176 25.6


User provided reference genes

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