Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.1e-216 757.3 705 100.0
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 8.5e-142 508.4 692 81.6
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 2.5e-141 506.9 555 84.5
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 5.8e-82 309.7 293 71.0
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 2.7e-79 300.8 450 61.6
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.9e-77 294.7 472 53.0
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 5.6e-77 293.1 333 62.2
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 4.8e-76 290.0 427 55.7
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 1.8e-75 288.1 345 58.3
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.8e-75 288.1 473 55.0
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 3.1e-75 287.3 436 65.4
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 6.9e-75 286.2 484 60.3
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.2e-74 285.4 427 61.1
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 2.6e-74 284.3 472 39.0
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 4.5e-74 283.5 468 46.8
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 2.2e-73 281.2 485 58.6
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 7.1e-72 276.2 263 70.7
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 7.1e-72 276.2 263 70.7
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 4.6e-71 273.5 451 59.9
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 7.9e-71 272.7 430 67.2
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.0e-70 272.3 343 56.6
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.8e-70 271.6 294 63.9
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 5.1e-70 270.0 343 56.0
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.1e-70 270.0 343 56.0
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.6e-68 265.0 343 57.1
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 2.1e-68 264.6 430 67.7
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.1e-68 264.6 429 46.2
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.1e-68 264.6 430 58.8
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 3.7e-68 263.8 436 63.1
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.8e-67 261.5 270 65.2
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.8e-67 261.5 425 61.2
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 1.2e-66 258.8 307 61.6
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 2.0e-66 258.1 430 65.8
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 2.0e-66 258.1 307 61.2
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 2.0e-66 258.1 307 61.6
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.6e-66 257.7 430 58.1
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 5.8e-66 256.5 408 71.1
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 3.8e-65 253.8 255 68.6
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 8.4e-65 252.7 274 65.3
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 1.1e-64 252.3 433 61.7
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.4e-64 251.9 307 60.3
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 4.2e-64 250.4 281 62.3
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 9.3e-64 249.2 264 62.9
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 9.3e-64 249.2 430 60.7
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 1.2e-63 248.8 305 58.4
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 3.0e-62 244.2 310 56.5
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 5.1e-62 243.4 432 57.6
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 3.3e-61 240.7 422 56.4
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.3e-61 240.4 311 56.3
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 9.7e-61 239.2 262 63.4
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 9.7e-61 239.2 316 59.2
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.6e-60 238.4 292 59.6
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 2.8e-60 237.7 430 54.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 3.7e-60 237.3 429 62.5
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 3.7e-60 237.3 415 46.7
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 1.4e-59 235.3 386 49.7
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.5e-58 231.9 324 51.9
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 2.6e-58 231.1 291 57.7
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 2.6e-58 231.1 291 57.7
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 5.9e-58 229.9 292 58.2
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 7.6e-58 229.6 291 57.4
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.0e-57 229.2 433 58.9
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 2.9e-57 227.6 291 57.0
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 2.9e-57 227.6 291 57.0
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 8.5e-57 226.1 441 52.4
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.1e-56 225.7 291 56.4
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.4e-56 225.3 291 59.8
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.9e-56 224.9 328 53.0
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 2.5e-56 224.6 332 54.8
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 3.2e-56 224.2 386 51.0
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.7e-55 221.1 291 56.7
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 4.6e-55 220.3 428 55.6
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 7.9e-55 219.5 297 56.2
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 3.9e-54 217.2 460 63.5
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 2.2e-52 211.5 537 61.6
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 2.8e-52 211.1 261 60.2
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 2.8e-52 211.1 262 61.1
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 6.9e-51 206.5 442 59.3
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 7.7e-50 203.0 253 59.3
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 9.4e-48 196.1 232 63.4
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.0e-46 192.6 387 55.8
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 2.0e-45 188.3 386 47.9
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 7.4e-45 186.4 470 48.1
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.7e-44 185.3 221 63.8
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 4.8e-44 183.7 318 50.0
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 5.3e-43 180.3 220 62.3
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 7.0e-43 179.9 387 65.9
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 3.4e-42 177.6 387 65.6
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.9e-40 171.8 222 61.3
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 9.4e-40 169.5 287 49.8
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 1.0e-38 166.0 225 60.0
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.5e-37 162.2 255 57.6
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.3e-36 159.1 216 62.5
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-35 155.2 222 59.0
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 1.6e-34 152.1 259 53.7
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.6e-34 152.1 135 56.3
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 3.5e-34 151.0 146 53.4
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 3.6e-31 141.0 239 53.6
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 3.6e-31 141.0 407 31.2
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 6.3e-28 130.2 289 46.4
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 9.1e-27 126.3 413 29.3
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.2e-23 115.9 242 34.3
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 4.4e-21 107.5 217 34.1
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 8.3e-20 103.2 85 60.0
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.9e-18 97.1 227 54.2
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 1.9e-16 92.0 325 40.3
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 5.5e-16 90.5 141 36.9
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 5.5e-16 90.5 75 62.7
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 3.0e-14 84.7 55 78.2
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.0e-13 82.0 53 69.8
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 4.9e-12 77.4 41 90.2
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.6e-10 72.4 61 63.9
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.6e-10 72.4 61 63.9
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.7e-09 68.9 203 29.6
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 1.2e-07 62.8 41 73.2
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 2.1e-07 62.0 48 64.6
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 3.6e-07 61.2 55 54.5


User provided reference genes

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