Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 2.4e-278 961.4 463 100.0
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 8.7e-236 820.1 468 84.2
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 5.8e-232 807.4 471 82.4
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 9.8e-187 657.1 471 67.1
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 5.9e-184 647.9 472 65.9
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 2.9e-183 645.6 471 65.6
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 3.0e-180 635.6 471 63.7
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 3.7e-178 628.6 472 64.0
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 1.4e-177 626.7 469 63.3
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.0e-175 620.5 469 68.0
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 1.0e-175 620.5 471 63.1
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 2.5e-174 615.9 473 61.3
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 3.4e-171 605.5 468 62.8
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 4.4e-171 605.1 481 61.1
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 1.7e-170 603.2 474 62.2
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.2e-170 602.8 468 62.6
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 3.7e-170 602.1 470 62.8
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 3.2e-169 599.0 465 62.4
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 5.9e-168 594.7 468 63.2
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.0e-167 594.0 468 63.2
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 1.5e-166 590.1 474 62.0
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 1.9e-166 589.7 470 61.9
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 2.1e-165 586.3 473 61.1
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 5.8e-163 578.2 471 59.9
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 2.9e-162 575.9 496 58.3
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 8.3e-162 574.3 468 58.5
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 1.1e-161 573.9 472 59.1
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 3.2e-161 572.4 458 62.2
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 1.2e-160 570.5 516 54.3
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.3e-159 567.0 449 63.3
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 3.0e-159 565.8 473 57.5
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 3.9e-159 565.5 479 57.6
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 3.1e-156 555.8 471 56.1
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 2.2e-154 549.7 473 57.7
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 4.9e-154 548.5 467 58.2
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 6.4e-154 548.1 471 56.9
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.1e-153 547.4 479 56.2
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 4.6e-152 542.0 495 54.7
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 3.9e-151 538.9 471 57.7
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 1.1e-150 537.3 468 55.6
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 2.5e-150 536.2 473 55.6
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 2.5e-150 536.2 527 53.1
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 8.1e-149 531.2 470 54.5
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 3.1e-148 529.3 461 55.3
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 5.2e-148 528.5 468 54.5
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 5.8e-147 525.0 472 54.7
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 7.6e-147 524.6 453 56.5
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 3.9e-143 512.3 465 55.1
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.3e-142 508.8 444 58.6
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 8.1e-141 504.6 384 63.3
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 1.8e-140 503.4 473 52.4
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 5.2e-140 501.9 468 53.2
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 7.6e-139 498.0 473 53.1
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 1.7e-138 496.9 389 59.9
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 3.8e-138 495.7 504 51.0
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 3.8e-138 495.7 387 62.3
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.1e-137 494.2 580 47.6
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 1.9e-137 493.4 469 51.6
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 3.2e-137 492.7 368 64.7
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 1.7e-135 486.9 465 53.3
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 3.9e-135 485.7 468 51.1
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 2.5e-134 483.0 474 49.8
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.5e-134 483.0 466 52.4
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.1e-133 479.9 468 50.9
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 4.8e-133 478.8 384 62.8
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 1.8e-132 476.9 484 49.2
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 6.9e-132 474.9 476 49.4
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 3.4e-131 472.6 472 49.2
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 4.4e-131 472.2 471 49.3
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 5.4e-129 465.3 478 50.0
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 2.7e-128 463.0 433 55.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.3e-127 460.7 472 48.1
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 2.5e-126 456.4 514 47.9
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 4.3e-126 455.7 465 49.2
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.6e-125 452.6 472 49.6
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.5e-123 447.2 482 49.6
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 2.6e-123 446.4 511 45.2
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 1.7e-122 443.7 522 44.4
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.9e-122 443.0 504 47.6
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 2.1e-120 436.8 498 47.6
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 3.5e-120 436.0 459 48.1
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 7.9e-120 434.9 472 48.1
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.5e-118 429.9 463 48.8
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 6.5e-114 415.2 467 46.3
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 4.1e-108 396.0 330 57.0
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 4.1e-108 396.0 474 44.7
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 1.7e-106 390.6 325 56.3
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 9.0e-100 368.2 308 58.4
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 1.4e-97 360.9 467 42.6
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 5.1e-95 352.4 256 64.5
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 1.4e-92 344.4 285 58.2
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 1.4e-89 334.3 275 59.6
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.7e-85 320.9 282 56.0
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 3.7e-85 319.7 289 55.4
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 6.3e-85 318.9 323 51.4
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.2e-80 304.7 295 54.9
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 8.0e-80 302.0 461 34.7
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 4.4e-70 269.6 468 34.2
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 1.0e-66 258.5 208 56.7
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.2e-64 251.5 189 63.0
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.8e-61 240.4 157 67.5
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.1e-60 238.4 224 54.0
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 2.0e-59 234.2 463 33.9
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 5.9e-59 232.6 186 60.2
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.0e-58 231.9 168 64.3
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.4e-52 211.5 187 54.0
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 5.2e-39 166.4 161 54.7
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 9.8e-38 162.2 342 31.3
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 8.1e-32 142.5 192 41.1
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 4.0e-31 140.2 132 51.5
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 1.5e-25 121.7 137 44.5
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.4e-20 105.1 85 60.0
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 1.4e-20 105.1 91 53.8
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 6.0e-19 99.8 275 28.4
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 4.8e-16 90.1 154 36.4
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 4.0e-15 87.0 50 72.0
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 5.3e-15 86.7 355 23.7
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.3e-10 72.0 71 43.7
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.3e-08 65.5 53 52.8
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 8.1e-08 62.8 95 35.8
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 6.9e-07 59.7 44 56.8
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.2e-06 58.9 56 44.6
MD03G1022900 Malus domestica HOM05D006389 ORTHO05D007863 7.6e-06 56.2 69 43.5


User provided reference genes

Program Settings