Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 7.5e-176 620.5 341 100.0
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.0e-164 583.6 309 95.1
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 5.5e-163 577.8 311 92.9
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 8.0e-162 573.9 311 92.3
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.1e-155 553.5 313 88.2
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 8.0e-154 547.4 314 86.6
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 3.0e-153 545.4 314 86.9
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 9.8e-152 540.4 312 85.9
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.7e-151 539.7 307 87.3
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.1e-150 537.0 313 85.3
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 5.4e-150 534.6 304 87.8
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 5.4e-150 534.6 311 85.5
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 9.2e-150 533.9 303 88.1
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 9.2e-150 533.9 302 87.1
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.2e-149 533.5 312 84.6
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.6e-149 533.1 311 85.9
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 4.6e-149 531.6 302 87.4
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 4.6e-149 531.6 307 86.3
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 7.8e-149 530.8 316 85.1
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.3e-148 529.3 313 84.7
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 3.9e-148 528.5 311 84.9
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 3.9e-148 528.5 313 84.3
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 5.0e-148 528.1 303 85.1
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 8.6e-148 527.3 303 85.8
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.5e-147 526.6 303 85.1
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.5e-147 525.8 303 86.5
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 5.6e-147 524.6 303 85.8
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 9.5e-147 523.9 303 85.8
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 9.5e-147 523.9 314 83.4
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.6e-146 523.1 305 85.9
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 2.8e-146 522.3 310 83.2
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 8.9e-145 517.3 306 84.3
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 8.9e-145 517.3 314 82.8
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 2.6e-144 515.8 319 82.1
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 4.4e-144 515.0 304 84.5
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 5.8e-144 514.6 311 81.7
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 7.5e-144 514.2 311 82.6
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 7.5e-144 514.2 309 82.2
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 9.8e-144 513.8 313 83.4
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 1.3e-143 513.5 353 75.6
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 3.7e-143 511.9 302 84.4
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 6.4e-143 511.1 311 81.4
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.2e-142 508.8 312 82.1
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.6e-141 506.5 312 81.4
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.6e-141 506.5 297 83.8
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.0e-140 502.3 311 81.0
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 3.0e-140 502.3 314 80.6
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 3.9e-140 501.9 321 79.8
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.1e-139 500.4 303 82.2
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 1.1e-139 500.4 336 76.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 4.3e-139 498.4 310 80.0
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 4.3e-139 498.4 312 79.8
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 4.3e-139 498.4 301 84.4
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.1e-138 496.1 296 82.8
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 2.8e-138 495.7 315 80.0
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 3.6e-138 495.4 308 79.5
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 4.7e-138 495.0 316 77.8
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 6.2e-138 494.6 313 79.6
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.4e-137 493.4 298 79.9
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 1.8e-137 493.0 303 80.5
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 3.1e-137 492.3 305 80.3
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-136 490.3 316 79.1
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 5.8e-136 488.0 297 80.8
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 9.8e-136 487.3 316 78.8
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.8e-136 487.3 313 77.6
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 1.7e-135 486.5 303 79.5
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 2.9e-135 485.7 313 78.3
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 2.9e-135 485.7 304 80.6
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 2.9e-135 485.7 313 78.3
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 2.9e-135 485.7 313 78.3
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 2.9e-135 485.7 304 80.6
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 2.9e-135 485.7 313 78.3
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 2.9e-135 485.7 304 80.6
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 2.9e-135 485.7 313 78.3
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 4.9e-135 485.0 300 81.3
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 4.9e-135 485.0 311 77.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.4e-134 483.4 313 77.6
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.4e-134 483.4 302 80.1
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 4.1e-134 481.9 310 77.4
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 5.4e-134 481.5 296 79.1
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 5.4e-134 481.5 311 77.2
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 9.2e-134 480.7 311 77.2
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.2e-133 480.3 311 76.8
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 2.7e-133 479.2 312 77.6
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 3.5e-133 478.8 312 77.6
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 3.5e-133 478.8 313 77.0
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 7.8e-133 477.6 347 76.7
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.9e-132 475.3 314 74.5
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 3.9e-132 475.3 318 73.9
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 3.9e-132 475.3 303 77.9
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 6.6e-132 474.6 314 74.5
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 8.6e-132 474.2 288 82.6
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.5e-131 473.4 309 79.0
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.9e-131 473.0 303 77.6
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.5e-131 472.6 301 77.7
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 2.5e-131 472.6 301 76.4
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.2e-130 470.3 319 73.4
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.8e-130 469.2 301 75.7
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.1e-129 467.2 307 75.9
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.8e-129 466.5 326 74.2
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.8e-129 466.5 319 72.7
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.8e-129 466.5 319 72.7
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 6.8e-129 464.5 303 78.9
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 7.6e-128 461.1 306 76.1
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 4.6e-125 451.8 254 87.8
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 5.6e-123 444.9 260 83.1
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.0e-116 424.1 301 70.4
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.1e-115 420.6 305 71.8
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 4.8e-114 415.2 307 71.0
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.4e-110 402.9 230 86.1
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 7.1e-110 401.4 230 85.2
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 3.3e-107 392.5 308 66.9
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 4.8e-106 388.7 254 76.4
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 6.2e-106 388.3 284 64.8
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.4e-105 387.1 301 61.8
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 3.4e-104 382.5 281 64.8
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.4e-102 377.1 291 69.4
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 2.4e-102 376.3 278 65.5
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.1e-101 373.2 277 72.2
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 1.3e-100 370.5 301 59.5
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.1e-99 367.5 301 60.5
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 4.3e-99 365.5 226 79.6
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.1e-97 360.9 220 80.9
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 5.9e-88 328.6 344 61.0
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 7.2e-86 321.6 246 63.8
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.3e-84 316.6 237 69.6
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 7.9e-77 291.6 299 48.5
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 3.1e-73 279.6 307 46.3
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 6.9e-73 278.5 149 88.6
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-67 260.8 165 81.2
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 4.8e-50 202.6 225 44.9
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.0e-48 197.2 158 64.6
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 3.6e-45 186.4 112 79.5
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.1e-41 174.9 290 36.9
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 7.8e-40 168.7 384 31.8
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.3e-39 167.9 194 50.0
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.0e-36 158.3 94 80.9
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.0e-36 156.8 94 79.8
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.0e-36 156.8 94 79.8
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 8.3e-34 148.7 114 71.9
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.8e-33 147.5 95 81.1
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.8e-33 147.5 111 70.3
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.0e-31 139.4 131 58.8
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.3e-18 95.5 63 74.6
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 3.2e-17 93.6 53 83.0
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.1e-16 90.9 67 73.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.1e-16 90.9 99 53.5
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.6e-14 82.8 58 72.4
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 3.6e-13 80.1 48 77.1
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 3.6e-13 80.1 48 77.1
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 4.7e-13 79.7 49 75.5
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.4e-10 69.3 84 47.6
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.6e-06 56.2 31 80.6
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.6e-06 56.2 31 80.6
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.6e-06 56.2 31 80.6
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.6e-06 56.2 31 80.6
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.6e-06 56.2 31 80.6


User provided reference genes

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