Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 0.0e+00 1275.4 651 100.0
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 0.0e+00 1109.0 653 87.0
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 0.0e+00 1083.2 653 84.8
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 0.0e+00 1078.2 653 84.5
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.3e-256 889.8 656 68.9
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.6e-254 882.1 656 68.4
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 9.0e-247 857.1 656 66.0
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.2e-246 856.7 657 65.9
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 2.5e-244 849.0 653 65.8
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.2e-244 848.6 655 65.3
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 3.6e-243 845.1 656 65.7
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 4.6e-243 844.7 654 64.7
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 6.1e-243 844.3 657 65.0
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.1e-241 840.1 655 65.2
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.4e-239 833.2 651 64.7
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 7.7e-238 827.4 658 65.3
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 4.2e-236 821.6 657 64.5
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 1.2e-235 820.1 655 63.7
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 7.9e-235 817.4 654 63.5
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.8e-234 816.2 648 64.2
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.3e-233 812.0 649 62.9
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 9.7e-233 810.4 652 62.6
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.7e-232 808.5 652 63.2
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 8.2e-232 807.4 655 62.3
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 8.2e-232 807.4 652 62.9
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.8e-231 806.2 653 61.7
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 2.4e-231 805.8 655 62.9
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.4e-231 805.8 658 62.2
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 9.1e-231 803.9 654 62.2
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 1.5e-230 803.1 658 62.9
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.5e-230 803.1 657 62.1
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.5e-230 803.1 653 61.4
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 4.5e-230 801.6 652 61.3
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 4.5e-230 801.6 659 63.1
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 5.9e-230 801.2 656 62.8
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 7.7e-230 800.8 653 61.4
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.2e-229 799.3 652 62.0
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 6.5e-229 797.7 658 61.2
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.2e-228 795.0 652 61.3
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 2.7e-227 792.3 659 62.7
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.8e-226 789.6 652 62.0
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 3.9e-226 788.5 655 61.4
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 1.5e-225 786.6 663 62.1
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 4.4e-225 785.0 661 61.1
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 4.8e-224 781.6 661 60.8
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 4.1e-223 778.5 654 61.2
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 5.3e-223 778.1 656 61.3
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 1.2e-222 776.9 663 59.3
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 2.6e-222 775.8 661 60.4
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.1e-220 770.4 654 60.6
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 7.2e-220 767.7 658 61.2
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 9.4e-220 767.3 658 59.9
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 8.0e-219 764.2 682 58.8
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.8e-218 763.1 660 60.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 6.7e-218 761.1 653 59.9
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 4.4e-217 758.4 657 58.9
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 3.7e-216 755.4 651 61.0
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 6.3e-216 754.6 651 59.3
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.1e-215 753.8 661 60.2
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 1.8e-215 753.1 654 59.3
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.4e-215 752.7 634 60.4
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 5.3e-215 751.5 631 61.5
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.2e-214 750.4 661 59.8
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 2.7e-214 749.2 647 59.7
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 1.0e-213 747.3 657 58.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.1e-212 743.8 654 57.3
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.9e-212 743.0 656 57.9
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 2.7e-211 739.2 659 57.2
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 3.0e-210 735.7 656 57.8
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 5.2e-210 734.9 660 59.1
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 5.2e-210 734.9 660 57.6
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 1.7e-208 729.9 655 56.9
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 2.0e-206 723.0 652 59.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.3e-205 720.3 654 56.7
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.3e-205 720.3 672 57.0
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 3.8e-205 718.8 654 56.9
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 6.5e-205 718.0 654 56.7
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 2.1e-203 713.0 650 57.4
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 3.6e-203 712.2 659 56.0
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 3.6e-203 712.2 659 56.0
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 8.0e-203 711.1 654 56.6
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 2.6e-201 706.1 651 56.8
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 5.7e-201 704.9 649 55.9
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.8e-200 702.6 646 58.4
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.8e-199 699.9 652 55.5
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.7e-198 696.0 657 52.7
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.9e-196 689.9 649 54.4
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 9.5e-196 687.6 652 55.1
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 4.0e-194 682.2 654 55.2
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.4e-191 672.9 660 53.6
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 7.0e-191 671.4 652 54.1
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 1.7e-189 666.8 507 67.5
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 4.7e-187 658.7 654 55.0
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 2.3e-186 656.4 655 52.1
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.0e-181 641.0 652 53.1
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.7e-181 640.2 680 49.3
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.6e-177 626.3 663 52.2
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 9.5e-172 607.8 657 49.5
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.0e-165 587.8 488 60.5
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 8.4e-136 488.4 516 49.2
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 2.7e-134 483.4 417 59.7
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 9.3e-127 458.4 331 69.2
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.2e-126 458.0 617 44.4
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 2.1e-126 457.2 361 63.2
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 6.1e-126 455.7 481 49.5
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 7.9e-126 455.3 660 39.8
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.4e-106 391.3 669 36.8
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 2.4e-106 390.6 654 35.2
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.2e-95 352.4 504 39.3
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 4.4e-92 343.2 359 48.5
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 6.6e-80 302.8 285 51.6
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 4.4e-76 290.0 269 52.4
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 3.5e-73 280.4 758 28.6
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.2e-62 245.4 709 26.1
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 4.0e-61 240.4 257 49.8
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.4e-58 231.9 356 39.3
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 4.7e-54 216.9 273 43.2
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 2.1e-49 201.4 226 49.1
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 2.8e-30 137.9 235 37.0
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 4.0e-29 134.0 82 70.7
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.7e-27 128.6 128 57.8
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 5.1e-24 117.1 209 31.6
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 5.6e-23 113.6 140 40.0
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 4.0e-21 107.5 83 60.2
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.2e-20 105.9 88 45.5
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.3e-19 102.4 132 45.5
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 8.4e-19 99.8 81 59.3
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.1e-18 99.4 249 31.3
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.2e-18 97.4 62 75.8
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.1e-18 96.7 88 48.9
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 7.1e-18 96.7 215 31.2
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 9.7e-15 86.3 90 46.7
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.6e-14 85.5 65 55.4
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 8.2e-14 83.2 96 46.9
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 3.9e-08 64.3 40 85.0
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 8.8e-08 63.2 73 47.9


User provided reference genes

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