Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 2.5e-203 711.8 351 100.0
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 1.1e-161 573.5 351 81.5
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 1.7e-159 566.2 351 80.6
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 6.1e-157 557.8 372 76.6
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 1.2e-104 384.0 355 55.5
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.7e-103 380.2 355 54.9
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 3.0e-103 379.4 321 59.5
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 1.1e-102 377.5 333 58.6
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 2.5e-102 376.3 282 64.9
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 7.3e-102 374.8 273 63.7
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 1.7e-98 363.6 259 66.8
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.7e-98 363.6 353 55.2
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 6.4e-98 361.7 353 55.0
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 2.4e-97 359.8 314 58.3
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 3.2e-97 359.4 328 55.8
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 4.2e-97 359.0 353 54.7
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 9.3e-97 357.8 351 54.7
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 1.2e-96 357.5 276 62.7
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 1.6e-96 357.1 325 55.7
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 3.5e-96 355.9 289 60.2
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.3e-95 354.0 331 54.7
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.3e-95 354.0 221 71.9
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 1.7e-95 353.6 260 64.2
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 3.0e-95 352.8 323 56.0
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 8.7e-95 351.3 356 54.5
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 3.3e-94 349.4 312 56.1
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.3e-93 347.4 310 55.5
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 1.6e-93 347.1 221 71.0
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 1.6e-93 347.1 306 56.5
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 2.1e-93 346.7 221 71.5
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 6.2e-93 345.1 323 55.1
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.1e-92 344.4 331 53.8
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 1.4e-92 344.0 343 52.2
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 1.8e-92 343.6 320 55.0
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 1.8e-92 343.6 324 54.9
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 1.8e-92 343.6 222 73.0
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 2.4e-92 343.2 221 69.7
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 2.4e-92 343.2 319 54.5
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 2.4e-92 343.2 319 54.5
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 3.1e-92 342.8 360 51.4
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 4.0e-92 342.4 347 53.9
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 6.9e-92 341.7 236 65.7
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 6.9e-92 341.7 342 52.3
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 1.2e-91 340.9 370 51.9
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 1.5e-91 340.5 291 57.7
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 2.0e-91 340.1 306 54.9
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 2.6e-91 339.7 327 53.2
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.6e-91 339.7 350 52.3
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 3.4e-91 339.3 354 52.5
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.4e-91 339.3 350 52.6
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 5.8e-91 338.6 258 62.0
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 7.6e-91 338.2 337 51.9
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 9.9e-91 337.8 340 52.1
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 9.9e-91 337.8 255 61.2
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 3.8e-90 335.9 267 59.9
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 3.8e-90 335.9 354 52.0
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 4.9e-90 335.5 356 51.1
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 6.4e-90 335.1 314 53.5
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 1.4e-89 334.0 297 56.6
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 3.2e-89 332.8 314 52.9
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 3.2e-89 332.8 358 50.8
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 5.4e-89 332.0 219 67.6
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 9.3e-89 331.3 351 50.4
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 1.2e-88 330.9 351 50.1
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 4.6e-88 328.9 359 49.9
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 6.0e-88 328.6 268 59.0
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 6.0e-88 328.6 262 59.5
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 7.9e-88 328.2 301 56.1
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 1.0e-87 327.8 272 57.4
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.0e-87 327.8 262 59.9
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.3e-87 327.4 308 54.5
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 1.8e-87 327.0 228 66.2
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 2.3e-87 326.6 262 59.5
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 3.9e-87 325.9 308 55.5
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 5.1e-87 325.5 221 69.7
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 8.7e-87 324.7 356 50.6
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 1.1e-86 324.3 266 58.6
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 1.1e-86 324.3 221 67.4
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 3.3e-86 322.8 237 61.6
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 4.3e-86 322.4 331 52.3
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 9.6e-86 321.2 231 62.3
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 2.8e-85 319.7 246 60.2
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 8.1e-85 318.2 392 46.9
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 1.1e-84 317.8 222 63.5
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 1.8e-84 317.0 339 49.3
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 9.0e-84 314.7 260 56.9
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.5e-83 313.9 222 64.9
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 3.8e-82 309.3 312 49.7
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 4.9e-82 308.9 319 51.1
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 2.5e-81 306.6 290 53.4
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 1.6e-80 303.9 345 48.4
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 3.5e-80 302.8 326 46.6
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 2.3e-79 300.1 223 59.2
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 4.3e-78 295.8 288 52.8
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 9.6e-78 294.7 344 45.6
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 1.3e-77 294.3 356 45.5
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 2.4e-76 290.0 267 54.7
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 4.1e-76 289.3 240 60.0
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 4.1e-76 289.3 328 50.3
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.4e-75 286.2 301 50.2
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.3e-74 284.3 237 57.0
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 6.5e-74 282.0 217 62.2
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 8.4e-74 281.6 215 61.4
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 4.6e-72 275.8 286 51.0
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 6.1e-72 275.4 217 58.1
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 8.7e-71 271.6 260 51.9
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 1.5e-70 270.8 228 57.0
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 7.4e-70 268.5 217 55.3
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 2.2e-69 266.9 217 57.1
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 1.1e-68 264.6 235 58.3
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 1.5e-67 260.8 217 56.7
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 2.0e-67 260.4 209 59.8
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 1.3e-66 257.7 216 54.2
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 3.2e-65 253.1 165 70.9
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.5e-65 252.3 228 53.1
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 1.3e-61 241.1 250 48.4
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 3.7e-61 239.6 213 54.9
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 6.3e-61 238.8 320 41.6
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 7.7e-59 231.9 151 68.9
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 7.7e-59 231.9 245 47.3
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 9.4e-57 224.9 250 48.4
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 1.0e-55 221.5 150 69.3
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 3.9e-55 219.5 182 56.0
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 4.2e-49 199.5 179 50.8
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 5.5e-49 199.1 204 45.6
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 1.1e-46 191.4 245 45.3
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 1.1e-36 158.3 245 35.1
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.6e-35 154.5 164 45.7
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 8.0e-32 142.1 133 51.9
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 5.2e-31 139.4 93 66.7
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 2.0e-30 137.5 233 35.2
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 1.6e-24 117.9 97 53.6
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.4e-20 104.8 108 51.9
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 7.3e-17 92.4 60 71.7
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 9.2e-12 75.5 58 60.3
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 1.6e-08 64.7 76 47.4
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 6.8e-07 59.3 53 52.8


User provided reference genes

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