Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0004890 Simmondsia chinensis HOM05D006620 ORTHO05D008921 3.5e-233 811.2 399 100.0
CiPaw.02G103900 Carya illinoinensis HOM05D006620 ORTHO05D008921 1.1e-197 693.3 392 85.7
Cpa.g.sc59.55 Carica papaya HOM05D006620 ORTHO05D008921 6.9e-197 690.6 393 84.7
Gohir.A10G119800 Gossypium hirsutum HOM05D006620 ORTHO05D008921 3.4e-196 688.3 383 84.3
Glyma.10G128400 Glycine max HOM05D006620 ORTHO05D008921 5.8e-196 687.6 389 85.1
Lalb_Chr01g0011271 Lupinus albus HOM05D006620 ORTHO05D008921 5.8e-196 687.6 388 85.1
GSVIVG01028992001 Vitis vinifera HOM05D006620 ORTHO05D008921 9.9e-196 686.8 390 85.4
QL06p022330 Quercus lobata HOM05D006620 ORTHO05D008921 1.3e-195 686.4 398 83.7
Atru.chr4.1848 Acer truncatum HOM05D006620 ORTHO05D008921 1.7e-195 686.0 393 83.7
CAN.G812.44 Capsicum annuum HOM05D006620 ORTHO05D008921 2.2e-195 685.6 391 84.7
ClCG05G003790 Citrullus lanatus HOM05D006620 ORTHO05D008921 2.9e-195 685.3 391 84.1
Sopen09g034080 Solanum pennellii HOM05D006620 ORTHO05D008921 4.9e-195 684.5 383 85.6
VMungo0720G1672 Vigna mungo HOM05D006620 ORTHO05D008921 4.9e-195 684.5 389 84.3
Manes.15G048100 Manihot esculenta HOM05D006620 ORTHO05D008921 6.4e-195 684.1 392 84.7
Actinidia25091 Actinidia chinensis HOM05D006620 ORTHO05D008921 1.4e-194 682.9 391 83.9
CsaV3_3G011480 Cucumis sativus L. HOM05D006620 ORTHO05D008921 1.9e-194 682.6 390 83.6
MELO3C006358.2 Cucumis melo HOM05D006620 ORTHO05D008921 7.1e-194 680.6 386 83.7
Gohir.D10G146800 Gossypium hirsutum HOM05D006620 ORTHO05D008921 7.1e-194 680.6 374 85.8
Phvul.007G238800 Phaseolus vulgaris HOM05D006620 ORTHO05D008921 1.2e-193 679.9 393 83.2
Cc03_g07000 Coffea canephora HOM05D006620 ORTHO05D008921 2.1e-193 679.1 389 83.0
Duzib151G1212 Durio zibethinus HOM05D006620 ORTHO05D008921 2.1e-193 679.1 390 82.8
SalBow2G2385 Salvia bowleyana HOM05D006620 ORTHO05D008921 2.7e-193 678.7 378 84.4
Thecc.04G218300 Theobroma cacao HOM05D006620 ORTHO05D008921 2.7e-193 678.7 387 83.5
AUR62043860 Chenopodium quinoa HOM05D006620 ORTHO05D008921 4.6e-193 677.9 394 83.5
arahy.Tifrunner.gnm1.ann1.8GH2US Arachis hypogaea HOM05D006620 ORTHO05D008921 7.8e-193 677.2 364 87.9
Cfa014839 Carpinus fangiana HOM05D006620 ORTHO05D008921 7.8e-193 677.2 396 82.6
SGA_v2.0_scaffold57G20185 Striga asiatica HOM05D006620 ORTHO05D008921 1.0e-192 676.8 378 83.6
TAR365G0583 Trochodendron aralioides HOM05D006620 ORTHO05D008921 1.0e-192 676.8 393 83.0
Oeu024839.2 Olea europaea HOM05D006620 ORTHO05D008921 1.3e-192 676.4 382 83.5
Hma1.2p1_1241F.1_g269780 Hydrangea macrophylla HOM05D006620 ORTHO05D008921 3.9e-192 674.9 373 85.8
Lj6g0024353 Lotus japonicus HOM05D006620 ORTHO05D008921 2.5e-191 672.2 393 82.2
Medtr1g046250 Medicago truncatula HOM05D006620 ORTHO05D008921 4.3e-191 671.4 389 83.0
PGR142G1067 Punica granatum HOM05D006620 ORTHO05D008921 4.3e-191 671.4 368 85.3
CANSAT78G1778 Cannabis sativa HOM05D006620 ORTHO05D008921 5.6e-191 671.0 391 81.8
Sed0017900 Sechium edule HOM05D006620 ORTHO05D008921 9.6e-191 670.2 390 81.5
CSS0026751 Camellia sinensis var. sinensis HOM05D006620 ORTHO05D008921 1.6e-190 669.5 372 86.3
Nn1g03061 Nelumbo nucifera HOM05D006620 ORTHO05D008921 1.6e-190 669.5 365 86.6
RcHm_v2.0_Chr4g0396281 Rosa chinensis HOM05D006620 ORTHO05D008921 4.8e-190 667.9 402 82.1
arahy.Tifrunner.gnm1.ann1.68MQ8I Arachis hypogaea HOM05D006620 ORTHO05D008921 6.2e-190 667.5 408 80.4
THA.LOC104801056 Tarenaya hassleriana HOM05D006620 ORTHO05D008921 6.2e-190 667.5 386 82.4
Migut.G00599 Erythranthe guttata HOM05D006620 ORTHO05D008921 8.1e-190 667.2 383 82.5
HanXRQChr07g0185841 Helianthus annuus HOM05D006620 ORTHO05D008921 8.1e-190 667.2 372 83.3
FAN17G2880 Fragaria x ananassa HOM05D006620 ORTHO05D008921 1.4e-189 666.4 391 82.6
ECA233G0386 Erigeron canadensis HOM05D006620 ORTHO05D008921 1.8e-189 666.0 364 85.7
Thhalv10007576m.g Eutrema salsugineum HOM05D006620 ORTHO05D008921 3.1e-189 665.2 392 80.9
Lsat_1_v5_gn_6_61660 Lactuca sativa HOM05D006620 ORTHO05D008921 4.0e-189 664.8 372 83.6
TPR.G24008 Trifolium pratense HOM05D006620 ORTHO05D008921 4.0e-189 664.8 391 81.8
Dinv29777 Davidia involucrata HOM05D006620 ORTHO05D008921 6.9e-189 664.1 391 81.3
MD13G1227100 Malus domestica HOM05D006620 ORTHO05D008921 6.9e-189 664.1 391 82.6
Ciclev10004924m.g Citrus clementina HOM05D006620 ORTHO05D008921 9.0e-189 663.7 394 81.0
Prupe.1G054600 Prunus persica HOM05D006620 ORTHO05D008921 9.0e-189 663.7 370 85.1
Carub.0001s0385 Capsella rubella HOM05D006620 ORTHO05D008921 1.2e-188 663.3 391 80.6
TWI53G1958 Tripterygium wilfordii HOM05D006620 ORTHO05D008921 1.2e-188 663.3 395 81.5
AL1G14300 Arabidopsis lyrata HOM05D006620 ORTHO05D008921 1.5e-188 662.9 391 80.8
Aqoxy5G00083 Aquilegia oxysepala HOM05D006620 ORTHO05D008921 2.0e-188 662.5 389 80.5
FAN12G0711 Fragaria x ananassa HOM05D006620 ORTHO05D008921 2.0e-188 662.5 392 82.1
AT1G04620 Arabidopsis thaliana HOM05D006620 ORTHO05D008921 2.6e-188 662.1 391 80.8
FvH4_4g05310 Fragaria vesca HOM05D006620 ORTHO05D008921 2.6e-188 662.1 368 85.9
PSO764G0126 Papaver somniferum HOM05D006620 ORTHO05D008921 4.5e-188 661.4 395 80.3
Gorai.011G164100 Gossypium raimondii HOM05D006620 ORTHO05D008921 1.3e-187 659.8 386 81.6
Sp1g03450 Schrenkiella parvula HOM05D006620 ORTHO05D008921 2.9e-187 658.7 392 80.1
CARHR003970 Cardamine hirsuta HOM05D006620 ORTHO05D008921 3.8e-187 658.3 394 79.7
CDE09G0604 Ceratophyllum demersum HOM05D006620 ORTHO05D008921 8.4e-187 657.1 364 84.1
SpUn0217_0010 Schrenkiella parvula HOM05D006620 ORTHO05D008921 8.4e-187 657.1 379 81.3
HPP92_009009 Vanilla planifolia HOM05D006620 ORTHO05D008921 1.1e-186 656.8 393 79.6
Potri.010G062300 Populus trichocarpa HOM05D006620 ORTHO05D008921 1.4e-186 656.4 396 79.5
DCAR_002286 Daucus carota HOM05D006620 ORTHO05D008921 1.9e-186 656.0 420 76.2
Hund19263 Selenicereus undatus HOM05D006620 ORTHO05D008921 5.4e-186 654.4 393 81.7
C05p02810 Brassica napus HOM05D006620 ORTHO05D008921 1.6e-185 652.9 379 80.5
BraA10t42578Z Brassica rapa HOM05D006620 ORTHO05D008921 2.7e-185 652.1 395 79.0
unitig_899.g14858 Utricularia gibba HOM05D006620 ORTHO05D008921 2.7e-185 652.1 405 77.3
BolC5t29064H Brassica oleracea HOM05D006620 ORTHO05D008921 3.5e-185 651.7 396 78.5
A10p03050 Brassica napus HOM05D006620 ORTHO05D008921 1.0e-184 650.2 376 80.9
ATR0787G041 Amborella trichopoda HOM05D006620 ORTHO05D008921 2.3e-184 649.0 389 78.9
FAN07G1877 Fragaria x ananassa HOM05D006620 ORTHO05D008921 6.7e-184 647.5 365 85.2
PSO832G4215 Papaver somniferum HOM05D006620 ORTHO05D008921 5.6e-183 644.4 397 78.3
Ah.04g153440 Amaranthus hybridus HOM05D006620 ORTHO05D008921 7.4e-183 644.0 375 83.5
Zm00001eb038650 Zea mays HOM05D006620 ORTHO05D008921 2.2e-179 632.5 364 81.0
COL.COLO4_34324 Corchorus olitorius HOM05D006620 ORTHO05D008921 7.1e-178 627.5 388 78.4
Lj3A630T51 Lonicera japonica HOM05D006620 ORTHO05D008921 1.2e-177 626.7 373 81.0
SEGI_36405 Sequoiadendron giganteum HOM05D006620 ORTHO05D008921 3.5e-177 625.2 371 78.7
Peaxi162Scf00125g00710 Petunia axillaris HOM05D006620 ORTHO05D008921 1.8e-176 622.9 340 87.4
AagrBONN_evm.TU.Sc2ySwM_228.367 Anthoceros agrestis HOM05D006620 ORTHO05D008921 6.7e-176 620.9 361 79.8
MBI07_g21064_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D008921 6.7e-176 620.9 340 85.9
AUR62035902 Chenopodium quinoa HOM05D006620 ORTHO05D008921 9.6e-175 617.1 377 79.8
Pp3c2_21860 Physcomitrium patens HOM05D006620 ORTHO05D008921 5.3e-173 611.3 361 78.1
AUR62035337 Chenopodium quinoa HOM05D006620 ORTHO05D008921 7.1e-170 600.9 394 75.9
Mapoly0088s0008 Marchantia polymorpha HOM05D006620 ORTHO05D008921 1.6e-169 599.7 361 76.5
EL10Ac3g06742 Beta vulgaris HOM05D006620 ORTHO05D008921 3.5e-169 598.6 352 83.8
vmacro00524 Vaccinium macrocarpon HOM05D006620 ORTHO05D008921 3.0e-168 595.5 433 69.5
Solyc09g091100.4 Solanum lycopersicum HOM05D006620 ORTHO05D008921 2.2e-166 589.3 321 87.9
FAN22G0814 Fragaria x ananassa HOM05D006620 ORTHO05D008921 4.1e-165 585.1 413 71.9
Rhsim09G0044600 Rhododendron simsii HOM05D006620 ORTHO05D008921 2.0e-164 582.8 393 74.6
Nitab4.5_0003287g0030 Nicotiana tabacum HOM05D006620 ORTHO05D008921 8.5e-163 577.4 417 71.0
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 6.5e-155 551.2 490 59.8
Aa31LG1G20250 Aethionema arabicum HOM05D006620 ORTHO05D008921 2.1e-153 546.2 326 79.4
CBR_g51515 Chara braunii HOM05D006620 ORTHO05D008921 5.1e-152 541.6 363 70.0
Glyma.20G079901 Glycine max HOM05D006620 ORTHO05D008921 5.3e-149 531.6 296 85.8
MCO15G577 Micromonas commoda HOM05D006620 ORTHO05D008921 1.6e-145 520.0 358 67.9
Cre11.g468700 Chlamydomonas reinhardtii HOM05D006620 ORTHO05D008921 3.3e-143 512.3 366 66.7
Os04g0320100 Oryza sativa ssp. japonica HOM05D006620 ORTHO05D008921 3.8e-139 498.8 272 86.8
Psat6g109520 Pisum sativum HOM05D006620 ORTHO05D008921 1.9e-138 496.5 297 80.8
Haze_11525 Corylus avellana HOM05D006620 ORTHO05D008921 2.7e-137 492.7 271 84.9
Ca_11784_v3 Cicer arietinum L. HOM05D006620 ORTHO05D008921 8.3e-134 481.1 316 75.0
Cc03_g06790 Coffea canephora HOM05D006620 ORTHO05D008921 6.3e-126 454.9 436 58.5
Eucgr.H00112 Eucalyptus grandis HOM05D006620 ORTHO05D008921 1.6e-116 423.7 240 83.8
PRCOL_00000047 Prasinoderma coloniale HOM05D006620 ORTHO05D008921 1.5e-114 417.2 310 64.5
Nitab4.5_0000451g0130 Nicotiana tabacum HOM05D006620 ORTHO05D008921 1.5e-103 380.6 389 54.5
Hma1.2p1_1241F.1_g269765 Hydrangea macrophylla HOM05D006620 ORTHO05D008921 7.7e-39 165.6 97 76.3
PGSC0003DMG401011586 Solanum tuberosum HOM05D006620 ORTHO05D008921 2.6e-34 150.6 86 82.6
Prupe.1G054400 Prunus persica HOM05D006620 ORTHO05D008921 1.2e-28 131.7 129 55.8
SEGI_19589 Sequoiadendron giganteum HOM05D006620 ORTHO05D025789 3.6e-28 130.2 79 73.4
SEGI_09547 Sequoiadendron giganteum HOM05D006620 ORTHO05D008921 1.0e-27 128.6 86 69.8
Actinidia35928 Actinidia chinensis HOM05D006620 ORTHO05D000073 2.8e-25 120.6 70 81.4
Ca_17765_v3 Cicer arietinum L. HOM05D006620 ORTHO05D044367 6.8e-19 99.4 57 80.7
COL.COLO4_07239 Corchorus olitorius HOM05D006620 ORTHO05D044367 1.8e-16 91.3 49 85.7
MBI11_g39495_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 2.7e-12 77.4 43 88.4
MBI15_g44046_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 6.1e-12 76.3 42 88.1
MBI12_g00604_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 1.0e-11 75.5 42 85.7
MELO3C028457.2 Cucumis melo HOM05D006620 ORTHO05D167913 2.0e-07 61.2 40 72.5


User provided reference genes

Program Settings