Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 0.0e+00 1087.8 531 100.0
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 1.3e-240 836.3 529 76.6
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 6.2e-238 827.4 530 74.2
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 6.5e-235 817.4 530 73.4
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 1.4e-234 816.2 529 76.2
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.0e-232 810.1 532 72.9
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 5.7e-231 804.3 532 72.7
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 1.3e-230 803.1 530 72.3
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.6e-230 802.7 530 72.6
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 4.8e-230 801.2 530 72.6
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.2e-228 796.6 533 72.0
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 5.9e-228 794.3 530 72.1
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 1.0e-227 793.5 530 71.9
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 1.3e-227 793.1 530 71.7
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.7e-227 792.7 530 71.9
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.1e-226 790.0 530 72.1
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 1.9e-226 789.3 532 74.4
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 4.2e-226 788.1 535 70.1
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 7.2e-226 787.3 532 70.9
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 7.2e-226 787.3 565 68.3
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 1.2e-225 786.6 531 71.2
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 3.6e-225 785.0 530 70.8
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 6.1e-225 784.3 530 70.8
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 5.1e-224 781.2 530 70.6
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 6.7e-224 780.8 530 71.5
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 2.0e-223 779.2 531 70.8
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 5.7e-223 777.7 529 70.3
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 7.4e-223 777.3 530 69.8
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 9.7e-223 776.9 530 70.6
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 2.8e-222 775.4 530 70.4
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 6.3e-222 774.2 513 74.9
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 6.3e-222 774.2 532 69.7
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 2.6e-220 768.8 530 68.9
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 2.9e-219 765.4 530 70.6
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 1.1e-218 763.5 538 70.4
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 1.9e-218 762.7 539 68.3
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 3.2e-218 761.9 572 66.1
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 7.2e-218 760.8 603 63.8
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 6.1e-217 757.7 490 74.7
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 3.9e-216 755.0 619 64.5
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 5.1e-216 754.6 552 67.9
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 8.8e-216 753.8 530 68.3
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 7.4e-215 750.7 529 67.7
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 7.4e-215 750.7 531 68.5
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 9.7e-215 750.4 569 65.2
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 1.3e-214 750.0 531 68.9
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 1.7e-214 749.6 532 68.0
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 2.2e-214 749.2 530 69.1
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 3.7e-214 748.4 532 67.7
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 6.3e-214 747.7 532 68.8
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 8.2e-214 747.3 534 67.8
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 1.4e-213 746.5 530 67.9
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.4e-213 746.5 532 67.5
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 5.3e-213 744.6 515 69.5
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 1.6e-212 743.0 576 62.7
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 3.5e-212 741.9 530 67.2
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 4.5e-212 741.5 532 67.1
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 5.9e-212 741.1 534 67.4
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 7.7e-212 740.7 533 67.5
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 5.0e-211 738.0 532 66.9
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 6.5e-211 737.6 531 69.5
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.7e-209 732.3 511 70.3
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 3.3e-207 725.3 533 68.7
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.1e-205 720.3 531 66.9
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 8.5e-203 710.7 530 66.6
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 3.2e-202 708.8 534 65.2
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 2.7e-201 705.7 492 70.1
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 4.7e-201 704.9 534 64.8
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 1.3e-195 686.8 485 70.1
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 2.9e-195 685.6 530 63.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.0e-192 675.6 485 67.4
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 1.2e-191 673.7 533 62.7
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 8.3e-190 667.5 533 63.8
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 1.8e-189 666.4 530 62.8
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 3.5e-188 662.1 532 61.1
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 1.5e-186 656.8 530 60.8
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 5.6e-186 654.8 544 61.9
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 3.6e-185 652.1 532 61.1
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 1.4e-184 650.2 468 68.6
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 1.8e-184 649.8 535 60.2
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 1.5e-183 646.7 533 60.8
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 7.5e-183 644.4 532 60.5
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 2.4e-181 639.4 532 59.4
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 4.1e-181 638.6 533 59.3
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 4.1e-181 638.6 533 59.3
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 4.1e-181 638.6 538 60.2
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 7.0e-181 637.9 522 61.5
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 9.2e-181 637.5 531 60.1
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 1.6e-180 636.7 455 69.0
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 5.9e-180 634.8 502 62.4
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 7.8e-180 634.4 535 59.3
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 7.3e-178 627.9 535 59.1
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 7.3e-178 627.9 530 60.4
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 2.9e-174 615.9 531 57.8
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 8.3e-174 614.4 592 54.6
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 1.9e-170 603.2 530 59.1
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 9.3e-141 504.6 381 64.8
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 4.8e-129 465.7 433 54.7
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 5.0e-118 429.1 531 45.6
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.1e-108 397.1 334 59.3
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 6.1e-108 395.6 423 48.5
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.9e-101 374.0 243 71.6
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 9.1e-96 355.1 460 45.2
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 7.2e-85 318.9 204 73.5
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 7.5e-82 308.9 253 57.7
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-66 258.1 395 40.5
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 8.0e-60 235.7 175 61.7
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 7.0e-56 222.6 223 53.8
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 9.2e-40 169.1 151 58.9
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 9.6e-29 132.5 79 72.2
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 1.3e-28 132.1 109 54.1
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 1.7e-25 121.7 65 81.5
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 1.6e-15 88.6 237 29.1
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 1.1e-13 82.4 57 73.7
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.5e-13 82.0 79 53.2
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 1.1e-11 75.9 53 60.4
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.3e-09 68.9 41 70.7
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 1.1e-08 65.9 33 90.9
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 2.5e-08 64.7 45 55.6
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 2.7e-07 61.2 41 63.4
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 5.1e-06 57.0 45 64.4


User provided reference genes

Program Settings