Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 9.8e-147 523.5 269 100.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.7e-82 310.1 224 73.7
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.5e-81 305.1 223 71.3
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 2.7e-80 302.8 223 70.4
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.5e-75 285.4 205 70.7
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.9e-74 282.7 209 70.8
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.1e-73 280.8 224 67.0
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 6.7e-71 271.6 222 64.4
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 6.7e-71 271.6 218 64.2
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.1e-70 270.8 224 62.9
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.5e-70 270.4 225 64.0
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 3.3e-70 269.2 224 62.9
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 3.3e-70 269.2 224 62.9
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 5.7e-70 268.5 225 63.1
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 9.7e-70 267.7 219 62.6
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 2.8e-69 266.2 210 65.7
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 3.7e-69 265.8 214 65.9
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 4.8e-69 265.4 242 58.7
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 6.3e-69 265.0 224 62.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 5.3e-68 261.9 225 62.2
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.0e-67 260.0 223 62.8
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 5.9e-67 258.5 221 60.2
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.0e-66 257.7 225 61.3
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.3e-66 257.3 232 60.3
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 1.3e-66 257.3 202 66.3
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 2.2e-66 256.5 208 67.3
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.8e-66 255.8 221 59.7
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 3.8e-66 255.8 221 58.8
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 6.5e-66 255.0 212 62.7
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 6.5e-66 255.0 221 58.4
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.1e-65 254.2 212 62.3
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.9e-65 253.4 203 64.5
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.2e-65 252.7 225 61.8
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 2.1e-64 250.0 222 58.1
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 2.7e-64 249.6 228 55.7
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.4e-63 247.3 224 60.7
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.8e-63 246.9 217 59.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.7e-61 240.4 236 57.6
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.8e-61 238.8 225 58.2
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 4.8e-61 238.8 209 60.8
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 8.2e-61 238.0 228 57.0
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.4e-60 237.3 225 57.8
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 9.1e-60 234.6 208 57.7
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 9.1e-60 234.6 228 56.1
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.5e-59 233.8 229 55.9
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.0e-59 233.4 226 56.6
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.0e-59 233.4 227 56.8
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.6e-59 233.0 226 57.1
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 4.5e-59 232.3 225 56.4
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 5.9e-59 231.9 225 57.3
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 7.7e-59 231.5 228 57.5
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.0e-58 231.1 224 56.2
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.3e-58 230.7 220 55.9
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.3e-58 230.7 226 56.2
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.7e-58 230.3 225 56.0
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.0e-58 228.8 231 56.7
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 5.0e-58 228.8 226 56.2
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 5.0e-58 228.8 210 59.0
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 3.2e-57 226.1 249 53.8
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 5.5e-57 225.3 230 55.7
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.5e-57 225.3 203 61.6
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.2e-56 224.2 231 54.1
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.7e-56 223.0 242 52.9
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 2.7e-56 223.0 231 55.0
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.4e-55 220.7 220 53.2
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.4e-55 220.7 231 54.5
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 1.8e-55 220.3 211 57.8
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 3.0e-55 219.5 220 56.4
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.2e-55 218.8 203 57.6
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 5.2e-55 218.8 228 54.4
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 6.7e-55 218.4 216 54.6
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 6.7e-55 218.4 228 54.4
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 6.7e-55 218.4 216 56.0
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 8.8e-55 218.0 225 52.9
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.5e-54 217.2 234 56.0
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 2.0e-54 216.9 218 53.7
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.0e-54 216.9 191 62.8
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.3e-54 216.1 230 54.8
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 4.4e-54 215.7 272 48.5
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 4.4e-54 215.7 225 53.3
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 5.7e-54 215.3 216 55.1
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 5.7e-54 215.3 177 62.1
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.2e-53 213.4 225 52.9
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 4.8e-53 212.2 183 60.7
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 8.2e-53 211.5 225 52.4
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 8.2e-53 211.5 225 52.4
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 8.2e-53 211.5 225 52.4
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 5.3e-52 208.8 216 53.7
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 2.0e-51 206.8 165 65.5
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 3.5e-51 206.1 193 59.1
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.2e-50 203.4 227 52.0
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.2e-50 203.4 219 54.3
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 2.9e-50 203.0 240 49.6
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 9.4e-49 198.0 199 56.8
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 1.6e-48 197.2 215 52.6
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.1e-48 196.8 202 52.5
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.1e-48 196.8 228 50.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 6.1e-48 195.3 212 51.4
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 8.0e-48 194.9 201 49.3
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.4e-47 194.1 295 42.7
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 2.3e-47 193.4 158 65.2
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.2e-46 191.0 180 58.9
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 2.6e-46 189.9 199 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 2.4e-44 183.3 220 45.0
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.1e-44 182.6 258 46.5
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 5.3e-44 182.2 209 53.1
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 7.0e-44 181.8 168 60.7
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 5.9e-43 178.7 146 65.8
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 5.9e-43 178.7 357 37.0
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 4.2e-41 172.6 157 61.1
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.2e-41 172.6 252 44.4
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.1e-40 170.2 187 50.3
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 8.0e-40 168.3 210 42.4
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.6e-38 163.3 118 67.8
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 4.1e-36 156.0 131 61.8
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.3e-34 151.0 215 47.0
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 5.0e-34 149.1 163 51.5
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 6.5e-34 148.7 117 64.1
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 6.5e-34 148.7 161 54.7
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 7.2e-33 145.2 129 59.7
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.0e-28 128.6 145 52.4
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 7.3e-25 118.6 156 44.9
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 9.5e-25 118.2 223 37.2
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.6e-24 116.3 162 47.5
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 8.0e-24 115.2 208 41.3
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.0e-23 112.8 92 63.0
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 5.2e-23 112.5 219 35.2
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.5e-19 99.8 92 59.8
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 1.7e-18 97.4 209 30.1
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 8.0e-16 88.6 204 32.4
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 5.2e-15 85.9 100 49.0
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 8.9e-15 85.1 99 51.5
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.2e-11 74.7 58 67.2
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.2e-11 74.7 84 57.1
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.6e-11 72.8 171 36.8
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.3e-10 71.2 53 64.2
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.1e-09 68.2 88 46.6
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.5e-09 67.8 91 50.5
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 2.5e-09 67.0 79 48.1
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.8e-08 63.5 66 57.6
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 4.7e-08 62.8 199 27.6


User provided reference genes

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