Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 1.1e-90 337.0 232 100.0
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 8.1e-57 224.6 237 75.9
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 8.1e-57 224.6 235 74.9
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 2.4e-56 223.0 237 66.7
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 4.0e-56 222.2 211 81.0
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 5.2e-56 221.9 211 81.0
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.8e-55 218.4 215 81.9
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.7e-54 216.9 237 73.4
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 4.9e-54 215.3 237 73.4
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 4.9e-54 215.3 209 79.4
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 1.1e-53 214.2 230 75.7
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.4e-53 213.8 211 79.1
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.4e-53 213.8 218 79.4
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.9e-53 213.4 239 72.4
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 3.2e-53 212.6 238 72.7
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 3.2e-53 212.6 215 80.0
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 5.4e-53 211.8 238 70.6
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.7e-52 209.5 195 83.1
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 3.5e-52 209.1 213 77.9
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 4.6e-52 208.8 228 74.6
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 6.0e-52 208.4 238 72.3
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 6.0e-52 208.4 207 80.7
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 7.8e-52 208.0 242 70.2
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 7.8e-52 208.0 214 78.0
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 7.8e-52 208.0 234 70.5
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 7.8e-52 208.0 204 81.4
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.0e-51 207.6 211 79.1
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.3e-51 207.2 184 87.5
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.7e-51 206.8 243 71.2
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.3e-51 206.5 235 71.5
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.0e-51 206.1 191 84.8
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 3.9e-51 205.7 231 71.9
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 5.1e-51 205.3 213 78.4
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 5.1e-51 205.3 214 77.1
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 6.6e-51 204.9 234 70.5
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 8.7e-51 204.5 237 71.3
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 8.7e-51 204.5 240 70.8
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.1e-50 204.1 243 71.6
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.1e-50 204.1 224 63.4
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 1.5e-50 203.8 234 70.1
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 2.5e-50 203.0 226 75.2
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.5e-50 203.0 184 87.5
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 3.3e-50 202.6 212 77.4
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 4.3e-50 202.2 237 72.6
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 5.6e-50 201.8 239 70.7
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 9.6e-50 201.1 242 70.2
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 9.6e-50 201.1 238 70.6
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 9.6e-50 201.1 200 79.5
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.3e-49 200.7 236 74.2
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-49 200.7 217 77.0
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 2.1e-49 199.9 233 73.8
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 2.8e-49 199.5 230 72.2
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 3.6e-49 199.1 209 78.0
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.2e-49 198.4 221 73.8
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 6.2e-49 198.4 184 84.2
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 8.1e-49 198.0 210 77.6
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 8.1e-49 198.0 232 71.6
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 1.1e-48 197.6 210 77.6
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.4e-48 197.2 210 77.1
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 1.4e-48 197.2 240 71.7
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.4e-48 197.2 184 58.2
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.8e-48 196.8 196 78.6
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.8e-48 196.8 262 55.0
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 3.1e-48 196.1 238 67.2
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 3.1e-48 196.1 184 85.9
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 5.3e-48 195.3 210 75.7
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 1.5e-47 193.7 228 71.9
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 2.0e-47 193.4 206 76.7
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.6e-47 193.0 184 85.3
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 2.6e-47 193.0 204 76.5
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 3.4e-47 192.6 233 70.4
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.4e-47 192.6 184 67.9
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 5.8e-47 191.8 206 78.2
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 5.8e-47 191.8 242 69.4
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 7.6e-47 191.4 206 77.2
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 7.6e-47 191.4 228 71.9
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 9.9e-47 191.0 210 74.3
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 1.3e-46 190.7 206 76.2
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-46 190.7 206 76.2
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 1.3e-46 190.7 207 76.3
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.3e-46 190.7 206 78.6
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.7e-46 190.3 206 76.7
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 2.9e-46 189.5 241 68.5
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 4.9e-46 188.7 119 79.0
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 4.9e-46 188.7 188 79.8
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 6.4e-46 188.3 206 79.1
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.1e-45 187.6 206 76.2
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.4e-45 187.2 245 68.6
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 2.4e-45 186.4 184 84.8
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 2.4e-45 186.4 207 75.8
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 5.4e-45 185.3 244 68.0
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 5.4e-45 185.3 244 68.0
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 5.4e-45 185.3 244 68.0
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 5.4e-45 185.3 151 62.9
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 5.4e-45 185.3 192 81.2
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 7.1e-45 184.9 192 79.7
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 7.1e-45 184.9 185 81.6
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 9.3e-45 184.5 209 76.1
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 2.1e-44 183.3 231 70.1
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.6e-44 182.2 209 75.1
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.0e-44 181.8 184 56.0
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 6.0e-44 181.8 188 79.8
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 1.0e-43 181.0 151 60.3
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.0e-43 181.0 131 67.9
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-43 179.9 131 67.9
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-43 179.9 131 67.9
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.1e-43 178.7 131 67.2
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.5e-42 176.4 186 76.9
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.3e-42 175.6 131 66.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 9.6e-42 174.5 166 89.2
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-41 174.1 227 69.6
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.1e-41 171.4 128 69.5
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.1e-40 169.5 133 67.7
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 9.0e-40 167.9 205 51.2
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 9.0e-40 167.9 205 51.2
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.6e-39 164.9 182 56.0
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 6.4e-38 161.8 201 72.1
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 1.1e-37 161.0 204 68.6
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.0e-36 155.2 157 85.4
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.0e-35 154.5 158 83.5
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.7e-35 151.8 225 48.0
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.1e-32 144.4 248 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 1.5e-31 140.6 156 49.4
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 1.0e-30 137.9 121 60.3
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-30 137.5 74 89.2
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 3.8e-30 136.0 218 63.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 1.4e-29 134.0 156 78.2
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.3e-17 94.4 61 68.9
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 8.8e-11 71.6 180 38.9
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 7.4e-10 68.6 115 76.5


User provided reference genes

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