Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0000540 Simmondsia chinensis HOM05D003301 ORTHO05D003665 8.0e-45 183.3 90 100.0
vmacro05243 Vaccinium macrocarpon HOM05D003301 ORTHO05D003665 6.9e-12 73.9 41 80.5
Cpa.g.sc40.52 Carica papaya HOM05D003301 ORTHO05D003665 9.0e-12 73.6 41 82.9
Hund10083 Selenicereus undatus HOM05D003301 ORTHO05D003665 1.5e-11 72.8 41 80.5
Actinidia05765 Actinidia chinensis HOM05D003301 ORTHO05D003665 3.4e-11 71.6 41 78.0
CSS0004573 Camellia sinensis var. sinensis HOM05D003301 ORTHO05D003665 4.4e-11 71.2 41 80.5
CiPaw.02G084900 Carya illinoinensis HOM05D003301 ORTHO05D003665 4.4e-11 71.2 41 78.0
Aa31LG8G16930 Aethionema arabicum HOM05D003301 ORTHO05D003665 5.8e-11 70.9 41 78.0
Ciclev10007544m.g Citrus clementina HOM05D003301 ORTHO05D003665 5.8e-11 70.9 41 80.5
COL.COLO4_34768 Corchorus olitorius HOM05D003301 ORTHO05D003665 5.8e-11 70.9 41 80.5
Duzib150G0839 Durio zibethinus HOM05D003301 ORTHO05D003665 5.8e-11 70.9 41 80.5
Atru.chr7.1441_Atru.chr7.1442 Acer truncatum HOM05D003301 ORTHO05D003665 7.6e-11 70.5 41 80.5
Duzib168G1984 Durio zibethinus HOM05D003301 ORTHO05D003665 7.6e-11 70.5 41 80.5
Manes.03G025500 Manihot esculenta HOM05D003301 ORTHO05D003665 7.6e-11 70.5 90 48.9
Thecc.09G102400 Theobroma cacao HOM05D003301 ORTHO05D003665 7.6e-11 70.5 41 80.5
TWI32G1357 Tripterygium wilfordii HOM05D003301 ORTHO05D003665 7.6e-11 70.5 41 78.0
Gorai.013G229900 Gossypium raimondii HOM05D003301 ORTHO05D003665 9.9e-11 70.1 41 78.0
Thhalv10001914m.g Eutrema salsugineum HOM05D003301 ORTHO05D003665 1.3e-10 69.7 41 75.6
CiPaw.01G151200 Carya illinoinensis HOM05D003301 ORTHO05D003665 1.7e-10 69.3 41 73.2
QL09p023443 Quercus lobata HOM05D003301 ORTHO05D003665 1.7e-10 69.3 41 75.6
Cfa003198 Carpinus fangiana HOM05D003301 ORTHO05D003665 2.2e-10 68.9 41 73.2
Haze_25809 Corylus avellana HOM05D003301 ORTHO05D003665 2.2e-10 68.9 41 75.6
DCAR_007883 Daucus carota HOM05D003301 ORTHO05D003665 2.2e-10 68.9 35 85.7
Oeu041533.1 Olea europaea HOM05D003301 ORTHO05D003665 2.2e-10 68.9 41 78.0
Potri.006G164000 Populus trichocarpa HOM05D003301 ORTHO05D003665 2.2e-10 68.9 41 75.6
Prupe.7G222000 Prunus persica HOM05D003301 ORTHO05D003665 2.2e-10 68.9 41 78.0
Rhsim10G0110900 Rhododendron simsii HOM05D003301 ORTHO05D003665 2.2e-10 68.9 41 75.6
EL10Ac5g11341 Beta vulgaris HOM05D003301 ORTHO05D003665 3.8e-10 68.2 41 78.0
AL3G48120 Arabidopsis lyrata HOM05D003301 ORTHO05D003665 4.9e-10 67.8 41 73.2
AT2G20000 Arabidopsis thaliana HOM05D003301 ORTHO05D003665 4.9e-10 67.8 41 73.2
CANSAT56G0288 Cannabis sativa HOM05D003301 ORTHO05D003665 4.9e-10 67.8 41 75.6
CARHR110420 Cardamine hirsuta HOM05D003301 ORTHO05D003665 4.9e-10 67.8 41 73.2
Sp3g33320 Schrenkiella parvula HOM05D003301 ORTHO05D003665 4.9e-10 67.8 41 73.2
Cfa011406 Carpinus fangiana HOM05D003301 ORTHO05D003665 6.4e-10 67.4 41 75.6
Cc02_g31350 Coffea canephora HOM05D003301 ORTHO05D003665 6.4e-10 67.4 44 75.0
SalBow1G8065 Salvia bowleyana HOM05D003301 ORTHO05D003665 6.4e-10 67.4 41 75.6
CAN.G165.27 Capsicum annuum HOM05D003301 ORTHO05D003665 8.4e-10 67.0 41 68.3
MD02G1061000 Malus domestica HOM05D003301 ORTHO05D003665 8.4e-10 67.0 41 75.6
MD15G1194500 Malus domestica HOM05D003301 ORTHO05D003665 8.4e-10 67.0 41 75.6
Dinv11538 Davidia involucrata HOM05D003301 ORTHO05D003665 1.1e-09 66.6 41 73.2
Nitab4.5_0003462g0010 Nicotiana tabacum HOM05D003301 ORTHO05D003665 1.1e-09 66.6 41 70.7
Nitab4.5_0005427g0040 Nicotiana tabacum HOM05D003301 ORTHO05D003665 1.1e-09 66.6 41 70.7
CAN.G303.59 Capsicum annuum HOM05D003301 ORTHO05D003665 1.4e-09 66.2 41 68.3
Duzib187G0026 Durio zibethinus HOM05D003301 ORTHO05D003665 1.4e-09 66.2 56 58.9
Oeu053267.2 Olea europaea HOM05D003301 ORTHO05D003665 1.4e-09 66.2 41 73.2
Potri.018G086300 Populus trichocarpa HOM05D003301 ORTHO05D003665 1.4e-09 66.2 41 73.2
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 1.4e-09 66.2 41 73.2
Aqoxy7G03886 Aquilegia oxysepala HOM05D003301 ORTHO05D003665 1.9e-09 65.9 37 78.4
BcaC06g36672 Brassica carinata HOM05D003301 ORTHO05D003665 1.9e-09 65.9 41 70.7
A07p00650 Brassica napus HOM05D003301 ORTHO05D003665 1.9e-09 65.9 41 70.7
C07p01500 Brassica napus HOM05D003301 ORTHO05D003665 1.9e-09 65.9 41 70.7
BolC7t40564H Brassica oleracea HOM05D003301 ORTHO05D003665 1.9e-09 65.9 41 70.7
BraA07t27863Z Brassica rapa HOM05D003301 ORTHO05D003665 1.9e-09 65.9 41 70.7
Carub.0003s3424 Capsella rubella HOM05D003301 ORTHO05D003665 1.9e-09 65.9 41 70.7
SHI02705 Sapria himalayana HOM05D003301 ORTHO05D003665 1.9e-09 65.9 36 80.6
Glyma.18G279500 Glycine max HOM05D003301 ORTHO05D003665 2.4e-09 65.5 41 73.2
Lsat_1_v5_gn_7_28060 Lactuca sativa HOM05D003301 ORTHO05D003665 2.4e-09 65.5 41 68.3
Ah.02g114730 Amaranthus hybridus HOM05D003301 ORTHO05D003665 3.2e-09 65.1 59 57.6
ATR0605G018 Amborella trichopoda HOM05D003301 ORTHO05D003665 3.2e-09 65.1 41 68.3
arahy.Tifrunner.gnm1.ann1.JNCQ1V Arachis hypogaea HOM05D003301 ORTHO05D003665 3.2e-09 65.1 41 73.2
arahy.Tifrunner.gnm1.ann1.M26Z43 Arachis hypogaea HOM05D003301 ORTHO05D003665 3.2e-09 65.1 41 73.2
Peaxi162Scf01003g00120 Petunia axillaris HOM05D003301 ORTHO05D003665 3.2e-09 65.1 41 68.3
THA.LOC104804009 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 3.2e-09 65.1 41 70.7
MELO3C024685.2 Cucumis melo HOM05D003301 ORTHO05D003665 4.2e-09 64.7 41 70.7
CsaV3_1G045710 Cucumis sativus L. HOM05D003301 ORTHO05D003665 4.2e-09 64.7 41 70.7
Dinv17765 Davidia involucrata HOM05D003301 ORTHO05D003665 4.2e-09 64.7 41 70.7
ECA236G0920 Erigeron canadensis HOM05D003301 ORTHO05D003665 4.2e-09 64.7 41 68.3
Lj1C1172G8 Lonicera japonica HOM05D003301 ORTHO05D003665 4.2e-09 64.7 41 73.2
VMungo1383G1642 Vigna mungo HOM05D003301 ORTHO05D003665 4.2e-09 64.7 41 73.2
AUR62029540 Chenopodium quinoa HOM05D003301 ORTHO05D003665 5.4e-09 64.3 35 82.9
Gorai.009G027300 Gossypium raimondii HOM05D003301 ORTHO05D003665 5.4e-09 64.3 41 73.2
HanXRQChr15g0482141 Helianthus annuus HOM05D003301 ORTHO05D003665 5.4e-09 64.3 41 68.3
Nn8g39106 Nelumbo nucifera HOM05D003301 ORTHO05D003665 5.4e-09 64.3 41 70.7
ClCG06G009040 Citrullus lanatus HOM05D003301 ORTHO05D003665 7.1e-09 63.9 41 68.3
Eucgr.D00685 Eucalyptus grandis HOM05D003301 ORTHO05D003665 7.1e-09 63.9 41 68.3
Gohir.A05G025700 Gossypium hirsutum HOM05D003301 ORTHO05D003665 7.1e-09 63.9 41 73.2
Gohir.D05G027200 Gossypium hirsutum HOM05D003301 ORTHO05D003665 7.1e-09 63.9 41 73.2
Lj2g0018429 Lotus japonicus HOM05D003301 ORTHO05D003665 7.1e-09 63.9 41 70.7
Nn6g35303 Nelumbo nucifera HOM05D003301 ORTHO05D003665 7.1e-09 63.9 37 75.7
PSO210G4003 Papaver somniferum HOM05D003301 ORTHO05D003665 7.1e-09 63.9 41 70.7
PSO210G4840 Papaver somniferum HOM05D003301 ORTHO05D003665 7.1e-09 63.9 41 70.7
THA.LOC104814565 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 7.1e-09 63.9 84 46.4
AUR62034804 Chenopodium quinoa HOM05D003301 ORTHO05D003665 9.3e-09 63.5 37 75.7
DCAR_003903 Daucus carota HOM05D003301 ORTHO05D003665 9.3e-09 63.5 35 77.1
Migut.I00703 Erythranthe guttata HOM05D003301 ORTHO05D003665 1.2e-08 63.2 41 68.3
Lj1g0006963 Lotus japonicus HOM05D003301 ORTHO05D003665 1.2e-08 63.2 41 70.7
Sopen03g014540 Solanum pennellii HOM05D003301 ORTHO05D003665 1.2e-08 63.2 41 68.3
TAR626G1939 Trochodendron aralioides HOM05D003301 ORTHO05D003665 1.6e-08 62.8 41 70.7
Lalb_Chr06g0174741 Lupinus albus HOM05D003301 ORTHO05D003665 2.1e-08 62.4 41 70.7
PGSC0003DMG400002563 Solanum tuberosum HOM05D003301 ORTHO05D003665 2.1e-08 62.4 41 65.9
EL10Ac8g18344 Beta vulgaris HOM05D003301 ORTHO05D003665 2.7e-08 62.0 41 70.7
HanXRQChr04g0114411 Helianthus annuus HOM05D003301 ORTHO05D003665 2.7e-08 62.0 41 63.4
Solyc03g061590.4 Solanum lycopersicum HOM05D003301 ORTHO05D003665 2.7e-08 62.0 41 68.3
Ca_06722_v3 Cicer arietinum L. HOM05D003301 ORTHO05D003665 4.6e-08 61.2 41 70.7
Glyma.19G042200 Glycine max HOM05D003301 ORTHO05D003665 4.6e-08 61.2 41 68.3
Peaxi162Scf00090g02113 Petunia axillaris HOM05D003301 ORTHO05D003665 4.6e-08 61.2 41 61.0
Phvul.004G048400 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 4.6e-08 61.2 41 68.3
Phvul.008G021500 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 4.6e-08 61.2 41 70.7
RcHm_v2.0_Chr2g0091551 Rosa chinensis HOM05D003301 ORTHO05D003665 4.6e-08 61.2 41 70.7
RcHm_v2.0_Chr2g0091631 Rosa chinensis HOM05D003301 ORTHO05D003665 4.6e-08 61.2 41 70.7
FvH4_1g05910 Fragaria vesca HOM05D003301 ORTHO05D003665 6.0e-08 60.8 41 68.3
FAN26G0830 Fragaria x ananassa HOM05D003301 ORTHO05D003665 7.8e-08 60.5 41 68.3
FAN26G2473 Fragaria x ananassa HOM05D003301 ORTHO05D003665 7.8e-08 60.5 41 68.3
SGA_v2.0_scaffold37G14722 Striga asiatica HOM05D003301 ORTHO05D003665 7.8e-08 60.5 35 77.1
SEGI_02735 Sequoiadendron giganteum HOM05D003301 ORTHO05D003665 1.0e-07 60.1 43 60.5
SGA_v2.0_scaffold5G02773 Striga asiatica HOM05D003301 ORTHO05D003665 1.0e-07 60.1 38 71.1
unitig_62.g23581 Utricularia gibba HOM05D003301 ORTHO05D003665 1.0e-07 60.1 38 71.1
GSVIVG01015317001 Vitis vinifera HOM05D003301 ORTHO05D003665 1.0e-07 60.1 41 68.3
FAN23G1082 Fragaria x ananassa HOM05D003301 ORTHO05D003665 1.3e-07 59.7 36 75.0
FAN28G0298 Fragaria x ananassa HOM05D003301 ORTHO05D003665 1.3e-07 59.7 41 68.3
Glyma.13G049400 Glycine max HOM05D003301 ORTHO05D003665 1.3e-07 59.7 41 65.9
FAN19G3015 Fragaria x ananassa HOM05D003301 ORTHO05D003665 1.7e-07 59.3 41 65.9
Psat3g146520 Pisum sativum HOM05D003301 ORTHO05D003665 1.7e-07 59.3 41 70.7
CDE05G0381 Ceratophyllum demersum HOM05D003301 ORTHO05D003665 2.3e-07 58.9 38 68.4
Psat1g063480 Pisum sativum HOM05D003301 ORTHO05D003665 2.3e-07 58.9 41 65.9
MSTRG.22791 Avicennia marina HOM05D003301 ORTHO05D003665 3.0e-07 58.5 41 61.0
Lalb_Chr02g0158441 Lupinus albus HOM05D003301 ORTHO05D003665 3.0e-07 58.5 41 65.9
THA.LOC104810537 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 3.9e-07 58.2 41 63.4
Zm00001eb144740 Zea mays HOM05D003301 ORTHO05D003665 3.9e-07 58.2 41 63.4
BcaB06g25725 Brassica carinata HOM05D003301 ORTHO05D003665 6.6e-07 57.4 41 61.0
PGR142G1632 Punica granatum HOM05D003301 ORTHO05D003665 6.6e-07 57.4 41 70.7
Sed0012844 Sechium edule HOM05D003301 ORTHO05D003665 6.6e-07 57.4 41 63.4
BcaC05g28893 Brassica carinata HOM05D003301 ORTHO05D003665 1.1e-06 56.6 41 61.0
A05p33220 Brassica napus HOM05D003301 ORTHO05D003665 1.1e-06 56.6 41 61.0
C05p50180 Brassica napus HOM05D003301 ORTHO05D003665 1.1e-06 56.6 41 61.0
BolC5t33768H Brassica oleracea HOM05D003301 ORTHO05D003665 1.1e-06 56.6 41 61.0
BraA05t22145Z Brassica rapa HOM05D003301 ORTHO05D003665 1.1e-06 56.6 41 61.0
HPP92_022014 Vanilla planifolia HOM05D003301 ORTHO05D003665 1.5e-06 56.2 38 65.8
Thhalv10021943m.g Eutrema salsugineum HOM05D003301 ORTHO05D003665 1.9e-06 55.8 41 63.4
Thecc.06G098300 Theobroma cacao HOM05D003301 ORTHO05D003665 1.9e-06 55.8 41 63.4
Aa31LG8G3460 Aethionema arabicum HOM05D003301 ORTHO05D003665 2.5e-06 55.5 36 66.7
AL3G29070 Arabidopsis lyrata HOM05D003301 ORTHO05D003665 3.3e-06 55.1 41 61.0
Pp3c7_3760 Physcomitrium patens HOM05D003301 ORTHO05D003665 3.3e-06 55.1 41 61.0
Sed0014147 Sechium edule HOM05D003301 ORTHO05D003665 3.3e-06 55.1 41 61.0
TPR.G9679 Trifolium pratense HOM05D003301 ORTHO05D003665 3.3e-06 55.1 41 58.5
Medtr6g016680 Medicago truncatula HOM05D003301 ORTHO05D003665 4.3e-06 54.7 41 58.5
Sp3g14690 Schrenkiella parvula HOM05D003301 ORTHO05D003665 4.3e-06 54.7 41 61.0
TPR.G3256 Trifolium pratense HOM05D003301 ORTHO05D003665 5.6e-06 54.3 41 63.4
AagrBONN_evm.TU.Sc2ySwM_117.2748 Anthoceros agrestis HOM05D003301 ORTHO05D003665 7.3e-06 53.9 40 65.0
Carub.0003s1607 Capsella rubella HOM05D003301 ORTHO05D003665 7.3e-06 53.9 41 58.5
Gohir.A02G118200 Gossypium hirsutum HOM05D003301 ORTHO05D003665 7.3e-06 53.9 41 61.0
Gohir.D03G058800 Gossypium hirsutum HOM05D003301 ORTHO05D003665 7.3e-06 53.9 41 61.0
Gorai.003G062700 Gossypium raimondii HOM05D003301 ORTHO05D003665 7.3e-06 53.9 41 61.0


User provided reference genes

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