Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 3.7e-221 772.3 591 100.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.9e-72 277.7 451 51.9
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 1.4e-71 275.4 445 52.8
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.8e-64 250.8 392 53.8
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 7.9e-62 243.0 407 51.1
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 1.3e-59 235.7 342 41.5
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 1.2e-57 229.2 411 47.2
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.6e-57 228.0 284 42.6
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 5.0e-56 223.8 290 43.8
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.9e-52 211.8 291 43.6
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.2e-51 206.5 476 34.2
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.5e-49 202.2 460 42.6
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 7.7e-49 199.9 440 49.8
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 5.5e-47 193.7 596 49.2
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 3.6e-46 191.0 576 50.0
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 2.3e-45 188.3 592 54.4
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.9e-45 187.6 590 27.3
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.2e-43 181.8 411 49.6
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.2e-43 181.8 264 39.4
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.2e-43 181.8 264 39.4
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 3.7e-43 181.0 601 52.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 4.1e-42 177.6 285 35.8
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.6e-41 174.9 596 53.2
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 5.9e-41 173.7 596 43.3
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.3e-37 161.8 341 35.2
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 3.1e-34 151.4 306 33.3
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 5.3e-34 150.6 431 45.0
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 9.1e-34 149.8 233 39.1
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 2.6e-33 148.3 161 47.2
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 2.6e-33 148.3 328 32.6
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 4.5e-33 147.5 277 53.1
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 1.0e-32 146.4 309 34.6
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 2.2e-32 145.2 313 33.9
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 2.9e-32 144.8 300 34.0
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 3.8e-32 144.4 127 56.7
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 1.1e-31 142.9 165 47.9
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 2.5e-31 141.7 214 33.2
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.1e-28 132.9 255 42.7
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 5.7e-28 130.6 131 51.1
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 7.5e-28 130.2 103 59.2
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 7.5e-28 130.2 134 48.5
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 2.8e-27 128.3 417 43.9
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 8.2e-27 126.7 603 51.2
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.4e-26 125.2 268 31.3
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 2.4e-26 125.2 267 30.7
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 3.8e-24 117.9 210 36.7
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 5.0e-24 117.5 208 34.6
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 5.0e-24 117.5 168 36.9
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 6.5e-24 117.1 225 30.2
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.5e-23 115.2 132 46.2
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.2e-23 114.4 274 29.9
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 5.5e-23 114.0 137 42.3
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 9.4e-23 113.2 175 33.7
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 1.6e-22 112.5 222 34.7
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.4e-21 109.4 206 34.5
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 2.3e-21 108.6 139 44.6
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 4.0e-21 107.8 336 49.1
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 6.8e-21 107.1 175 30.9
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 2.0e-20 105.5 175 39.4
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 2.0e-20 105.5 176 30.1
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 2.6e-20 105.1 173 37.6
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 3.4e-20 104.8 178 33.7
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 4.4e-20 104.4 164 39.6
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 5.7e-20 104.0 183 35.5
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 2.8e-19 101.7 170 35.3
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 3.7e-19 101.3 281 27.8
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 8.3e-19 100.1 130 39.2
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 1.1e-18 99.8 204 31.9
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.4e-18 99.4 194 30.4
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 3.1e-18 98.2 179 35.2
Migut.A00317 Erythranthe guttata HOM05D006287 ORTHO05D008192 4.1e-18 97.8 93 48.4
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 5.4e-18 97.4 133 38.3
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.2e-17 96.3 225 29.8
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 2.7e-17 95.1 135 40.0
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 7.7e-17 93.6 172 34.9
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 7.7e-17 93.6 186 32.8
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 7.7e-17 93.6 230 28.7
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.2e-16 92.0 133 36.1
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.2e-16 92.0 131 39.7
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 2.9e-16 91.7 150 39.3
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 3.8e-16 91.3 205 34.1
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 5.0e-16 90.9 232 30.2
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 6.5e-16 90.5 168 36.9
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.1e-15 89.7 220 26.8
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 2.5e-15 88.6 131 36.6
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 3.2e-15 88.2 152 37.5
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 1.6e-14 85.9 135 35.6
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 1.6e-14 85.9 196 33.2
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 2.7e-14 85.1 123 37.4
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 3.6e-14 84.7 130 34.6
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 6.1e-14 84.0 135 35.6
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 6.1e-14 84.0 137 32.8
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 8.0e-14 83.6 138 37.0
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 1.4e-13 82.8 136 34.6
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 2.3e-13 82.0 181 29.3
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 2.3e-13 82.0 146 37.7
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.3e-13 82.0 146 37.7
CAN.G1030.28 Capsicum annuum HOM05D006287 ORTHO05D008192 6.8e-13 80.5 54 72.2
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 1.5e-12 79.3 165 34.5
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.5e-12 79.3 125 37.6
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.6e-12 78.6 179 33.0
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 3.4e-12 78.2 136 33.1
RcHm_v2.0_Chr7g0216401 Rosa chinensis HOM05D006287 ORTHO05D008192 7.5e-12 77.0 97 43.3
Zm00001eb092390 Zea mays HOM05D006287 ORTHO05D000003 3.7e-11 74.7 111 39.6
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 4.9e-11 74.3 212 25.9
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 4.9e-11 74.3 176 28.4
Zm00001eb310610 Zea mays HOM05D000181 ORTHO05D000003 4.9e-11 74.3 111 38.7
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 8.3e-11 73.6 157 32.5
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 1.1e-10 73.2 246 26.8
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.8e-10 72.4 109 33.0
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 4.1e-10 71.2 180 28.9
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 4.1e-10 71.2 185 28.1
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 9.2e-10 70.1 160 26.2
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.6e-09 69.3 206 25.7
BcaNung04645 Brassica carinata HOM05D006287 ORTHO05D008192 1.6e-09 69.3 143 34.3
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 2.0e-09 68.9 190 27.4
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 3.5e-09 68.2 253 23.7
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 4.5e-09 67.8 233 24.5
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 1.7e-08 65.9 196 24.0
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 2.9e-08 65.1 196 25.0
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.9e-08 65.1 146 28.1
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 6.6e-08 63.9 180 26.1
Pp3c19_930 Physcomitrium patens HOM05D000001 ORTHO05D000003 8.6e-08 63.5 240 20.4
Psat6g233440 Pisum sativum HOM05D007202 ORTHO05D009125 8.6e-08 63.5 167 28.7
Actinidia05652 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.1e-07 63.2 229 23.6
MELO3C031038.2 Cucumis melo HOM05D007559 ORTHO05D009642 1.1e-07 63.2 177 26.6
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 1.1e-07 63.2 128 28.9
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 3.3e-07 61.6 264 23.9
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 3.3e-07 61.6 121 27.3
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 3.3e-07 61.6 179 24.6
Zm00001eb193870 Zea mays HOM05D000181 ORTHO05D000003 3.3e-07 61.6 106 37.7
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 4.3e-07 61.2 140 23.6
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 5.6e-07 60.8 193 24.9
AagrBONN_evm.TU.Sc2ySwM_344.1466__1467__1468 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 59.7 283 24.0
Migut.F02120 Erythranthe guttata HOM05D000001 ORTHO05D010091 1.2e-06 59.7 176 22.2
Lsat_1_v5_gn_4_48440 Lactuca sativa HOM05D000001 ORTHO05D000003 1.2e-06 59.7 229 21.4
PSO170G4945 Papaver somniferum HOM05D000001 ORTHO05D009667 1.2e-06 59.7 184 24.5
Phvul.011G010900 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.2e-06 59.7 217 25.8
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 1.2e-06 59.7 195 25.6
SMO174G0127 Selaginella moellendorffii HOM05D000001 ORTHO05D378704 1.6e-06 59.3 202 23.3
SMO239G0011 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 1.6e-06 59.3 248 22.2
vmacro02472 Vaccinium macrocarpon HOM05D000001 ORTHO05D009986 1.6e-06 59.3 157 30.6
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.6e-06 59.3 193 24.9
AagrBONN_evm.TU.Sc2ySwM_117.3665 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-06 58.9 196 22.4
Migut.I00330 Erythranthe guttata HOM05D000001 ORTHO05D000003 2.1e-06 58.9 167 25.1
HPP92_016080 Vanilla planifolia HOM05D000001 ORTHO05D000003 2.1e-06 58.9 187 23.5
Zm00001eb307450 Zea mays HOM05D000181 ORTHO05D000003 2.1e-06 58.9 105 36.2
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 2.8e-06 58.5 127 26.8
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 2.8e-06 58.5 160 30.6
Lj2P1098T51 Lonicera japonica HOM05D000001 ORTHO05D000003 2.8e-06 58.5 160 27.5
Manes.12G154000 Manihot esculenta HOM05D000001 ORTHO05D011132 2.8e-06 58.5 165 23.6
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 2.8e-06 58.5 180 24.4
Atru.BG.305.p Acer truncatum HOM05D000001 ORTHO05D000003 3.6e-06 58.2 255 22.7
AagrBONN_evm.TU.Sc2ySwM_368.46__47 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-06 58.2 242 21.1
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 3.6e-06 58.2 189 22.8
Duzib093G1875 Durio zibethinus HOM05D000855 ORTHO05D008530 3.6e-06 58.2 196 23.5
Glyma.07G226200 Glycine max HOM05D000001 ORTHO05D000003 3.6e-06 58.2 213 23.0
PSO170G2610 Papaver somniferum HOM05D000001 ORTHO05D000003 3.6e-06 58.2 230 20.4
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 3.6e-06 58.2 100 35.0
QL03p029538 Quercus lobata HOM05D000001 ORTHO05D000003 3.6e-06 58.2 188 24.5
Atru.chr3.3387 Acer truncatum HOM05D000001 ORTHO05D000003 4.7e-06 57.8 175 26.9
Aa31LG10G13160 Aethionema arabicum HOM05D000001 ORTHO05D009704 4.7e-06 57.8 183 21.3
Cc01_g06600 Coffea canephora HOM05D000001 ORTHO05D000003 4.7e-06 57.8 187 22.5
Cc10_g12890 Coffea canephora HOM05D000001 ORTHO05D000003 4.7e-06 57.8 192 25.0
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 4.7e-06 57.8 187 25.1
MD02G1151200 Malus domestica HOM05D000891 ORTHO05D000761 4.7e-06 57.8 125 25.6
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 4.7e-06 57.8 199 27.6
Sed0016377 Sechium edule HOM05D000001 ORTHO05D007291 4.7e-06 57.8 204 25.0
VMungo1215G0478 Vigna mungo HOM05D000001 ORTHO05D000003 4.7e-06 57.8 229 25.8
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 6.1e-06 57.4 186 27.4
Ciclev10014257m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.1e-06 57.4 269 23.4
COL.COLO4_31427 Corchorus olitorius HOM05D000001 ORTHO05D000003 6.1e-06 57.4 137 27.7
DCAR_031614 Daucus carota HOM05D000001 ORTHO05D000003 6.1e-06 57.4 208 23.6
RcHm_v2.0_Chr7g0219831 Rosa chinensis HOM05D006218 ORTHO05D007338 6.1e-06 57.4 158 23.4
Sabra06G0154500 Salix brachista HOM05D006596 ORTHO05D008497 6.1e-06 57.4 159 21.4
C08p36010 Brassica napus HOM05D000001 ORTHO05D000003 8.0e-06 57.0 163 28.2
BolC8t51183H Brassica oleracea HOM05D000001 ORTHO05D000003 8.0e-06 57.0 163 28.2
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 8.0e-06 57.0 207 22.2
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 8.0e-06 57.0 127 28.3
unitig_37.g12085 Utricularia gibba HOM05D003028 ORTHO05D003465 8.0e-06 57.0 130 26.9
GSVIVG01003804001 Vitis vinifera HOM05D000001 ORTHO05D000003 8.0e-06 57.0 197 23.4


User provided reference genes

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