Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 2.2e-258 895.2 479 100.0
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 2.4e-172 609.4 504 63.7
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.6e-168 595.5 495 65.5
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 6.8e-167 591.3 506 63.2
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 6.8e-167 591.3 491 65.0
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.9e-165 585.1 514 62.6
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.4e-164 583.6 514 62.5
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.9e-164 583.2 511 62.6
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.9e-164 583.2 495 63.8
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.4e-164 582.8 505 62.2
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 9.2e-164 580.9 514 62.1
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.0e-163 578.2 514 61.9
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.7e-162 576.6 495 61.2
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.3e-162 576.2 494 64.0
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 3.0e-162 575.9 495 63.8
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 3.9e-162 575.5 517 64.0
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 4.3e-161 572.0 489 62.6
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 5.6e-161 571.6 510 62.0
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 7.3e-161 571.2 476 63.7
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.1e-160 569.7 495 63.8
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.6e-160 568.9 498 65.5
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.8e-159 566.6 493 61.7
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 3.1e-159 565.8 511 60.9
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.2e-158 563.9 502 61.0
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.5e-158 563.5 496 62.3
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.6e-158 562.8 513 60.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.3e-157 560.5 494 63.2
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.7e-157 560.1 487 62.4
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 2.2e-157 559.7 509 60.3
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 2.9e-157 559.3 513 59.5
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.7e-157 558.9 506 59.9
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 6.4e-157 558.1 521 60.8
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 8.3e-157 557.8 510 59.4
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.1e-156 557.4 482 62.7
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.4e-156 557.0 515 59.8
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.9e-156 556.6 498 64.7
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.4e-156 556.2 518 59.8
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 4.1e-156 555.4 483 61.9
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 4.1e-156 555.4 503 60.4
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 5.4e-156 555.1 506 61.1
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.6e-155 553.5 511 61.1
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 2.1e-155 553.1 515 64.7
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.6e-155 552.0 526 59.1
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 7.8e-155 551.2 554 60.6
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.7e-154 550.1 501 59.9
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.7e-154 550.1 507 59.2
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 2.3e-154 549.7 505 61.2
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.9e-154 548.9 479 62.2
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 5.1e-154 548.5 502 58.4
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.5e-153 547.0 515 59.2
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 2.5e-153 546.2 524 58.0
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 4.3e-153 545.4 509 59.1
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 4.3e-153 545.4 506 59.5
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 5.6e-153 545.0 481 59.7
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.6e-153 545.0 535 57.4
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.6e-153 545.0 529 57.8
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 9.5e-153 544.3 383 73.4
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 9.5e-153 544.3 505 61.8
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 9.5e-153 544.3 518 58.7
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.2e-152 543.9 403 69.5
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 2.8e-152 542.7 507 59.0
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.7e-152 542.0 537 56.6
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.7e-152 542.0 484 62.2
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 1.8e-151 540.0 519 58.8
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.3e-151 539.7 512 58.6
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 4.0e-151 538.9 512 59.0
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 4.0e-151 538.9 498 62.9
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 8.9e-151 537.7 499 59.7
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 1.5e-150 537.0 383 69.5
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 4.4e-150 535.4 512 58.2
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.8e-150 535.0 515 59.0
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.3e-149 533.9 506 57.9
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.3e-149 533.9 506 61.9
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 2.9e-149 532.7 517 55.9
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 3.7e-149 532.3 518 59.3
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 6.4e-149 531.6 473 60.9
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 8.4e-149 531.2 467 61.2
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.4e-148 530.4 378 72.8
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.4e-148 528.5 483 61.3
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 5.4e-148 528.5 489 58.7
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.2e-147 527.3 501 58.9
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 1.6e-147 526.9 482 59.8
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 1.6e-147 526.9 509 58.0
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.6e-147 526.9 485 59.2
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.5e-147 525.8 514 56.8
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.5e-147 525.8 504 58.1
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 3.5e-147 525.8 483 58.6
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 4.6e-147 525.4 492 57.5
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.6e-147 525.4 498 59.2
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 4.6e-147 525.4 481 58.2
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 6.0e-147 525.0 483 59.4
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 6.0e-147 525.0 512 56.2
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 6.0e-147 525.0 486 58.0
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 6.0e-147 525.0 511 56.0
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.0e-146 524.2 488 58.4
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.7e-146 523.5 505 56.0
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 3.0e-146 522.7 520 56.3
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 3.0e-146 522.7 501 58.3
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 3.9e-146 522.3 508 55.7
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 8.6e-146 521.2 506 55.9
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 8.6e-146 521.2 538 55.2
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 1.1e-145 520.8 504 56.7
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 1.1e-145 520.8 485 57.5
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 2.5e-145 519.6 508 55.5
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 3.3e-145 519.2 509 56.0
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 3.3e-145 519.2 520 56.0
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 5.6e-145 518.5 483 58.6
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 7.3e-145 518.1 464 58.2
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 7.3e-145 518.1 553 54.2
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.6e-145 517.7 510 57.1
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.2e-144 517.3 509 56.4
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.6e-144 515.8 533 55.5
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.6e-144 515.8 524 56.1
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 4.7e-144 515.4 487 56.9
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.4e-143 513.1 484 58.1
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.4e-143 513.1 522 56.5
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 6.8e-143 511.5 491 57.6
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 1.2e-142 510.8 491 57.4
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.2e-142 510.8 519 57.6
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.5e-142 510.4 473 57.5
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 7.6e-142 508.1 473 57.5
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 4.9e-141 505.4 544 56.4
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.9e-140 503.4 391 66.5
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.9e-140 503.4 391 66.8
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.2e-140 502.7 464 56.2
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 2.7e-139 499.6 472 57.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.7e-139 499.6 557 53.0
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.7e-139 499.6 488 56.6
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.0e-138 497.7 385 64.7
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.3e-138 496.5 385 64.7
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 2.8e-136 489.6 489 54.8
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 7.9e-131 471.5 374 64.2
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 5.6e-129 465.3 468 54.9
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.4e-127 460.7 486 53.9
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 5.3e-127 458.8 498 52.6
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.2e-126 457.6 301 77.1
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.2e-124 449.5 472 54.0
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 2.3e-122 443.4 500 49.4
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.7e-122 441.8 467 55.7
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 2.6e-118 429.9 464 50.4
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 4.6e-107 392.5 483 49.9
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.4e-103 380.9 363 56.7
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 3.1e-95 353.2 257 72.8
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 5.0e-93 345.9 311 56.9
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.8e-87 327.4 226 75.7
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 5.9e-86 322.4 366 51.6
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.0e-85 321.6 394 43.4
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.2e-72 277.3 254 59.1
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 2.3e-61 240.7 163 77.9
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 8.9e-50 202.2 256 50.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 1.1e-44 185.3 171 62.6
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 5.8e-41 172.9 138 68.1
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 2.7e-38 164.1 234 41.5
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 7.8e-38 162.5 286 36.4
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.2e-33 148.7 167 55.1
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 3.3e-28 130.6 447 25.3
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 3.4e-25 120.6 486 23.5
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 5.8e-17 93.2 83 59.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.2e-14 85.5 66 74.2
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 7.9e-14 82.8 103 48.5
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.0e-13 82.4 101 45.5
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 3.0e-13 80.9 81 45.7
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 6.7e-13 79.7 79 48.1
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 6.7e-13 79.7 82 46.3
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 6.7e-13 79.7 62 56.5
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.3e-12 77.4 196 30.1
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.3e-11 75.5 127 40.2
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.4e-10 72.0 87 46.0
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 4.2e-07 60.5 36 83.3
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 5.5e-07 60.1 60 56.7
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 5.5e-07 60.1 91 46.2
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.2e-06 58.9 35 82.9
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 3.5e-06 57.4 245 27.3


User provided reference genes

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