Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.8e-99 365.9 186 100.0
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 8.3e-36 154.5 167 55.1
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.2e-34 150.6 167 55.7
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 4.5e-34 148.7 165 56.4
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 5.9e-34 148.3 167 55.1
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 5.9e-34 148.3 167 52.7
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.9e-34 148.3 167 55.7
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 5.9e-34 148.3 167 55.7
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.0e-33 147.5 167 52.7
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 1.3e-33 147.1 167 54.5
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.7e-33 146.7 167 55.1
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.9e-33 146.0 167 55.1
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.9e-33 146.0 167 54.5
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.8e-33 145.6 167 52.1
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 3.8e-33 145.6 165 53.9
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.5e-33 144.8 167 53.9
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 6.5e-33 144.8 167 53.9
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 6.5e-33 144.8 164 54.3
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 8.5e-33 144.4 174 52.9
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 8.5e-33 144.4 167 53.3
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.1e-32 144.1 165 53.9
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 1.1e-32 144.1 167 54.5
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 1.5e-32 143.7 167 51.5
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.5e-32 143.7 167 51.5
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 1.5e-32 143.7 167 53.9
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.5e-32 143.7 167 55.1
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.9e-32 143.3 167 50.3
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.9e-32 143.3 167 52.7
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.9e-32 143.3 167 53.9
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.2e-32 142.5 170 54.7
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 3.2e-32 142.5 167 54.5
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 3.2e-32 142.5 167 53.3
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.2e-32 142.5 167 52.7
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 3.2e-32 142.5 167 52.7
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 4.2e-32 142.1 167 53.9
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 4.2e-32 142.1 165 52.7
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 4.2e-32 142.1 178 51.7
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.2e-32 142.1 167 52.7
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 5.5e-32 141.7 167 55.1
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 5.5e-32 141.7 167 52.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 5.5e-32 141.7 165 52.1
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 7.2e-32 141.4 167 52.1
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 7.2e-32 141.4 162 54.9
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 7.2e-32 141.4 167 53.3
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 7.2e-32 141.4 165 52.7
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 9.4e-32 141.0 167 50.9
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 9.4e-32 141.0 167 52.1
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 9.4e-32 141.0 165 53.9
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 9.4e-32 141.0 165 52.7
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 9.4e-32 141.0 178 51.7
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 1.2e-31 140.6 167 53.9
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 1.2e-31 140.6 167 52.7
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.2e-31 140.6 178 51.1
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.6e-31 140.2 167 53.3
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.6e-31 140.2 167 52.7
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 2.1e-31 139.8 165 53.3
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 2.1e-31 139.8 167 52.1
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 2.1e-31 139.8 167 51.5
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.1e-31 139.8 167 51.5
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.1e-31 139.8 167 52.7
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 2.1e-31 139.8 167 51.5
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.7e-31 139.4 165 53.3
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 2.7e-31 139.4 169 53.3
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 2.7e-31 139.4 167 52.1
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.7e-31 139.4 167 52.7
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.7e-31 139.4 178 51.1
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 3.6e-31 139.0 167 52.1
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 3.6e-31 139.0 178 51.1
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 4.7e-31 138.7 167 51.5
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.7e-31 138.7 167 52.1
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 4.7e-31 138.7 172 50.6
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.7e-31 138.7 167 51.5
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 4.7e-31 138.7 167 50.9
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 4.7e-31 138.7 167 49.7
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 4.7e-31 138.7 178 50.6
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 4.7e-31 138.7 165 53.3
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 6.1e-31 138.3 187 48.7
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 6.1e-31 138.3 167 50.9
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 8.0e-31 137.9 167 51.5
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 8.0e-31 137.9 165 52.7
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.0e-30 137.5 167 51.5
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 1.0e-30 137.5 167 50.3
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 1.4e-30 137.1 167 51.5
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.4e-30 137.1 167 51.5
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.4e-30 137.1 167 53.3
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 1.4e-30 137.1 165 52.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.4e-30 137.1 167 50.9
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.8e-30 136.7 167 52.1
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 1.8e-30 136.7 167 52.1
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.8e-30 136.7 178 49.4
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 3.0e-30 136.0 167 51.5
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.0e-30 136.0 165 52.7
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 4.0e-30 135.6 165 50.9
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 4.0e-30 135.6 167 50.3
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 4.0e-30 135.6 167 52.1
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 4.0e-30 135.6 167 51.5
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.0e-30 135.6 162 53.1
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 4.0e-30 135.6 167 51.5
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 4.0e-30 135.6 167 52.1
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 5.2e-30 135.2 178 50.0
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 5.2e-30 135.2 167 50.3
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.2e-30 135.2 169 52.7
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 5.2e-30 135.2 167 52.1
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.2e-30 135.2 178 49.4
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 5.2e-30 135.2 167 52.1
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 6.8e-30 134.8 165 52.1
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 8.8e-30 134.4 167 49.7
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 8.8e-30 134.4 169 49.7
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 8.8e-30 134.4 167 51.5
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.2e-29 134.0 167 50.3
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.2e-29 134.0 167 51.5
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.2e-29 134.0 178 48.9
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.2e-29 134.0 167 51.5
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.5e-29 133.7 167 50.3
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.5e-29 133.7 178 48.9
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.5e-29 133.7 172 49.4
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 2.0e-29 133.3 167 49.7
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 2.0e-29 133.3 167 49.7
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 2.0e-29 133.3 167 50.9
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.6e-29 132.9 148 55.4
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 2.6e-29 132.9 167 51.5
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.6e-29 132.9 169 50.9
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 3.4e-29 132.5 165 50.3
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 4.4e-29 132.1 167 50.3
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 4.4e-29 132.1 167 50.9
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 5.7e-29 131.7 167 50.3
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 5.7e-29 131.7 160 50.6
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 5.7e-29 131.7 160 50.6
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.5e-29 131.3 178 48.3
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 9.8e-29 131.0 174 47.7
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 9.8e-29 131.0 165 49.7
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 1.3e-28 130.6 165 49.7
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.3e-28 130.6 167 49.7
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.7e-28 130.2 167 49.1
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.7e-28 130.2 178 47.8
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.2e-28 129.8 160 50.0
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 8.3e-28 127.9 167 49.7
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.8e-27 126.7 191 45.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.0e-26 123.2 160 46.2
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.0e-26 123.2 136 56.6
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 7.7e-26 121.3 135 54.8
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.0e-25 120.9 164 47.6
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 2.3e-25 119.8 167 46.7
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 2.9e-25 119.4 160 45.6
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 8.6e-25 117.9 158 46.2
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 8.6e-25 117.9 159 45.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.9e-24 116.7 213 39.9
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 2.0e-21 106.7 159 42.1
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.8e-19 100.1 128 50.8
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 3.3e-16 89.4 137 45.3
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.6e-13 79.7 83 56.6
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 2.9e-12 76.3 71 62.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 5.4e-11 72.0 66 63.6
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 7.8e-10 68.2 150 35.3
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 8.6e-09 64.7 89 48.3


User provided reference genes

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