Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 5.1e-35 150.6 79 100.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 3.2e-13 78.2 67 62.7
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 7.1e-13 77.0 65 61.5
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 9.3e-13 76.6 56 67.9
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.1e-12 75.5 68 61.8
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 2.1e-12 75.5 76 53.9
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.1e-12 75.5 62 61.3
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.7e-12 75.1 67 61.2
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 2.7e-12 75.1 70 61.4
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 3.5e-12 74.7 55 67.3
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 3.5e-12 74.7 69 59.4
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 4.6e-12 74.3 67 56.7
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 7.9e-12 73.6 50 72.0
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 7.9e-12 73.6 63 60.3
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 7.9e-12 73.6 62 59.7
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 7.9e-12 73.6 62 59.7
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 7.9e-12 73.6 65 63.1
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.0e-11 73.2 66 62.1
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.3e-11 72.8 66 56.1
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.3e-11 72.8 63 61.9
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 2.3e-11 72.0 50 68.0
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 2.3e-11 72.0 63 61.9
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 3.0e-11 71.6 70 55.7
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 5.1e-11 70.9 54 63.0
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 6.7e-11 70.5 70 58.6
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 6.7e-11 70.5 69 58.0
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 6.7e-11 70.5 67 56.7
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 6.7e-11 70.5 46 71.7
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 8.7e-11 70.1 66 60.6
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 8.7e-11 70.1 65 60.0
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 8.7e-11 70.1 53 62.3
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 8.7e-11 70.1 61 59.0
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 8.7e-11 70.1 49 67.3
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.1e-10 69.7 56 58.9
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.5e-10 69.3 64 56.2
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.5e-10 69.3 61 59.0
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 1.9e-10 68.9 56 64.3
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.9e-10 68.9 54 63.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 2.5e-10 68.6 46 71.7
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 2.5e-10 68.6 61 60.7
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 2.5e-10 68.6 69 53.6
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 2.5e-10 68.6 67 53.7
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.3e-10 67.8 81 49.4
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.3e-10 67.8 63 57.1
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.3e-10 67.8 60 61.7
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 5.6e-10 67.4 53 60.4
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 9.6e-10 66.6 66 56.1
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 9.6e-10 66.6 49 61.2
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 9.6e-10 66.6 49 61.2
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 9.6e-10 66.6 49 61.2
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 9.6e-10 66.6 49 61.2
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 1.3e-09 66.2 57 59.6
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.6e-09 65.9 63 58.7
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.6e-09 65.9 65 58.5
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.6e-09 65.9 72 54.2
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.6e-09 65.9 63 58.7
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 2.1e-09 65.5 61 55.7
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.8e-09 65.1 48 62.5
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.8e-09 65.1 47 66.0
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 3.7e-09 64.7 49 59.2
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 3.7e-09 64.7 49 59.2
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 3.7e-09 64.7 58 60.3
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 3.7e-09 64.7 81 48.1
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.7e-09 64.7 49 65.3
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 4.8e-09 64.3 66 54.5
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 8.1e-09 63.5 72 47.2
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 1.1e-08 63.2 66 54.5
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 1.1e-08 63.2 37 73.0
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 1.4e-08 62.8 53 62.3
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.8e-08 62.4 63 55.6
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 3.1e-08 61.6 48 58.3
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 3.1e-08 61.6 68 51.5
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.2e-07 59.7 57 54.4
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.2e-07 59.7 55 58.2
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 1.2e-07 59.7 43 65.1
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 1.2e-07 59.7 65 46.2
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 2.0e-07 58.9 43 60.5
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 3.4e-07 58.2 48 58.3
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 4.5e-07 57.8 64 51.6
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 4.5e-07 57.8 64 51.6
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 7.6e-07 57.0 66 48.5
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 9.9e-07 56.6 61 52.5
CiPaw.01G161200 Carya illinoinensis HOM05D008368 ORTHO05D010489 1.3e-06 56.2 48 50.0
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 2.2e-06 55.5 61 49.2
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 3.8e-06 54.7 62 51.6
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 6.4e-06 53.9 43 58.1


User provided reference genes

Program Settings