Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0007000 Simmondsia chinensis HOM05D007177 ORTHO05D008984 7.6e-95 350.5 181 100.0
CiPaw.08G015800 Carya illinoinensis HOM05D007177 ORTHO05D008984 8.5e-62 240.7 176 71.0
PGR102G2243 Punica granatum HOM05D007177 ORTHO05D008984 2.5e-61 239.2 143 80.4
CiPaw.07G217700 Carya illinoinensis HOM05D007177 ORTHO05D008984 6.1e-60 234.6 176 69.3
CAN.G21.13 Capsicum annuum HOM05D007177 ORTHO05D008984 1.2e-58 230.3 176 67.6
Dinv35881 Davidia involucrata HOM05D007177 ORTHO05D008984 1.5e-58 229.9 173 68.8
QL12p031282 Quercus lobata HOM05D007177 ORTHO05D008984 2.6e-58 229.2 176 67.6
Lj7A712G53 Lonicera japonica HOM05D007177 ORTHO05D008984 4.4e-58 228.4 176 66.5
TAR383G0793 Trochodendron aralioides HOM05D007177 ORTHO05D008984 4.4e-58 228.4 173 68.8
GSVIVG01035726001 Vitis vinifera HOM05D007177 ORTHO05D008984 5.7e-58 228.0 174 67.2
Duzib168G0166 Durio zibethinus HOM05D007177 ORTHO05D008984 7.5e-58 227.6 173 68.8
Eucgr.G02593 Eucalyptus grandis HOM05D007177 ORTHO05D008984 7.5e-58 227.6 173 68.8
Hund26404 Selenicereus undatus HOM05D007177 ORTHO05D008984 7.5e-58 227.6 174 69.0
THA.LOC104815045 Tarenaya hassleriana HOM05D007177 ORTHO05D008984 1.3e-57 226.9 176 65.9
Nitab4.5_0009600g0010 Nicotiana tabacum HOM05D007177 ORTHO05D008984 1.7e-57 226.5 176 65.9
Manes.16G068300 Manihot esculenta HOM05D007177 ORTHO05D008984 2.8e-57 225.7 176 66.5
Nitab4.5_0000125g0190 Nicotiana tabacum HOM05D007177 ORTHO05D008984 3.7e-57 225.3 176 65.3
Peaxi162Scf00105g01429 Petunia axillaris HOM05D007177 ORTHO05D008984 3.7e-57 225.3 176 66.5
Ciclev10009098m.g Citrus clementina HOM05D007177 ORTHO05D008984 4.8e-57 224.9 176 65.3
Nn8g39274 Nelumbo nucifera HOM05D007177 ORTHO05D008984 1.1e-56 223.8 173 68.8
Potri.006G246500 Populus trichocarpa HOM05D007177 ORTHO05D008984 1.1e-56 223.8 176 63.6
Thecc.09G144000 Theobroma cacao HOM05D007177 ORTHO05D008984 1.4e-56 223.4 173 67.1
Gohir.A06G048000 Gossypium hirsutum HOM05D007177 ORTHO05D008984 1.8e-56 223.0 173 67.1
Gohir.D06G048000 Gossypium hirsutum HOM05D007177 ORTHO05D008984 1.8e-56 223.0 173 67.1
Gorai.010G053800 Gossypium raimondii HOM05D007177 ORTHO05D008984 1.8e-56 223.0 173 67.1
CSS0040333 Camellia sinensis var. sinensis HOM05D007177 ORTHO05D008984 2.4e-56 222.6 174 64.4
CANSAT25G2101 Cannabis sativa HOM05D007177 ORTHO05D008984 3.1e-56 222.2 176 64.8
Sopen08g021780 Solanum pennellii HOM05D007177 ORTHO05D008984 4.1e-56 221.9 177 67.2
TWI32G0279 Tripterygium wilfordii HOM05D007177 ORTHO05D008984 5.3e-56 221.5 182 63.2
Aqoxy7G01836 Aquilegia oxysepala HOM05D007177 ORTHO05D008984 7.0e-56 221.1 176 67.0
Cpa.g.sc91.5 Carica papaya HOM05D007177 ORTHO05D008984 1.2e-55 220.3 176 64.2
Solyc08g067840.3 Solanum lycopersicum HOM05D007177 ORTHO05D008984 1.2e-55 220.3 177 66.7
unitig_748.g7498 Utricularia gibba HOM05D007177 ORTHO05D008984 3.5e-55 218.8 177 63.8
Lalb_Chr23g0269021 Lupinus albus HOM05D007177 ORTHO05D008984 4.5e-55 218.4 176 64.8
Aa31LG3G15740 Aethionema arabicum HOM05D007177 ORTHO05D008984 5.9e-55 218.0 174 63.2
Sabra06G0192800 Salix brachista HOM05D007177 ORTHO05D008984 5.9e-55 218.0 176 62.5
Atru.chr7.2324 Acer truncatum HOM05D007177 ORTHO05D008984 1.0e-54 217.2 176 63.1
Actinidia13290 Actinidia chinensis HOM05D007177 ORTHO05D008984 1.0e-54 217.2 173 64.2
Cc08_g08290 Coffea canephora HOM05D007177 ORTHO05D008984 1.0e-54 217.2 176 64.8
MSTRG.11740 Avicennia marina HOM05D007177 ORTHO05D008984 1.3e-54 216.9 169 68.0
Hma1.2p1_0175F.1_g077220 Hydrangea macrophylla HOM05D007177 ORTHO05D008984 1.3e-54 216.9 173 63.6
ATR0037G062 Amborella trichopoda HOM05D007177 ORTHO05D008984 1.7e-54 216.5 180 61.1
vmacro11111 Vaccinium macrocarpon HOM05D007177 ORTHO05D008984 2.9e-54 215.7 175 64.0
AUR62024834 Chenopodium quinoa HOM05D007177 ORTHO05D008984 3.8e-54 215.3 178 63.5
DCAR_006262 Daucus carota HOM05D007177 ORTHO05D008984 3.8e-54 215.3 176 63.6
BcaB08g37058 Brassica carinata HOM05D007177 ORTHO05D008984 6.5e-54 214.5 174 62.6
Sp6g32150 Schrenkiella parvula HOM05D007177 ORTHO05D008984 6.5e-54 214.5 174 62.1
BcaC04g19225 Brassica carinata HOM05D007177 ORTHO05D008984 8.5e-54 214.2 174 62.1
C09p65410 Brassica napus HOM05D007177 ORTHO05D008984 8.5e-54 214.2 174 62.1
BolC9t59366H Brassica oleracea HOM05D007177 ORTHO05D008984 8.5e-54 214.2 174 62.1
Thhalv10014231m.g Eutrema salsugineum HOM05D007177 ORTHO05D008984 1.1e-53 213.8 174 62.1
Os01g0617900 Oryza sativa ssp. japonica HOM05D007177 ORTHO05D008984 1.1e-53 213.8 176 63.1
Medtr3g108040 Medicago truncatula HOM05D007177 ORTHO05D008984 1.5e-53 213.4 176 61.9
arahy.Tifrunner.gnm1.ann1.JYH77Y Arachis hypogaea HOM05D007177 ORTHO05D008984 1.9e-53 213.0 176 62.5
Lj1g0018262 Lotus japonicus HOM05D007177 ORTHO05D008984 1.9e-53 213.0 176 61.4
AL6G22110 Arabidopsis lyrata HOM05D007177 ORTHO05D008984 2.5e-53 212.6 175 61.1
A10p26300 Brassica napus HOM05D007177 ORTHO05D008984 2.5e-53 212.6 174 61.5
BraA10t44687Z Brassica rapa HOM05D007177 ORTHO05D008984 2.5e-53 212.6 174 61.5
FvH4_2g30170 Fragaria vesca HOM05D007177 ORTHO05D008984 2.5e-53 212.6 173 63.6
AT5G11450 Arabidopsis thaliana HOM05D007177 ORTHO05D008984 3.2e-53 212.2 175 61.7
AUR62032383 Chenopodium quinoa HOM05D007177 ORTHO05D008984 3.2e-53 212.2 180 62.2
Carub.0006s0990 Capsella rubella HOM05D007177 ORTHO05D008984 4.2e-53 211.8 175 60.6
FAN27G1396 Fragaria x ananassa HOM05D007177 ORTHO05D008984 4.2e-53 211.8 173 63.6
CARHR201780 Cardamine hirsuta HOM05D007177 ORTHO05D008984 5.5e-53 211.5 175 61.7
ECA233G2849 Erigeron canadensis HOM05D003107 ORTHO05D008984 5.5e-53 211.5 174 60.9
MD08G1136300 Malus domestica HOM05D007177 ORTHO05D008984 5.5e-53 211.5 176 62.5
RcHm_v2.0_Chr6g0312741 Rosa chinensis HOM05D007177 ORTHO05D008984 5.5e-53 211.5 173 63.6
Sed0014124 Sechium edule HOM05D007177 ORTHO05D008984 7.2e-53 211.1 174 62.6
Ah.10g025430 Amaranthus hybridus HOM05D007177 ORTHO05D008984 2.1e-52 209.5 176 62.5
PSO063G2030 Papaver somniferum HOM05D007177 ORTHO05D008984 3.6e-52 208.8 174 60.9
Zm00001eb159760 Zea mays HOM05D007177 ORTHO05D008984 3.6e-52 208.8 176 61.4
MELO3C011212.2 Cucumis melo HOM05D007177 ORTHO05D008984 4.7e-52 208.4 175 62.3
TPR.G34677 Trifolium pratense HOM05D007177 ORTHO05D008984 4.7e-52 208.4 176 61.4
Zm00001eb358300 Zea mays HOM05D007177 ORTHO05D008984 4.7e-52 208.4 175 61.7
Migut.A00273 Erythranthe guttata HOM05D007177 ORTHO05D008984 8.0e-52 207.6 176 61.4
PSO782G2748 Papaver somniferum HOM05D007177 ORTHO05D008984 8.0e-52 207.6 174 60.3
FAN24G2430 Fragaria x ananassa HOM05D007177 ORTHO05D008984 1.0e-51 207.2 180 61.7
Lsat_1_v5_gn_6_10880 Lactuca sativa HOM05D003107 ORTHO05D008984 1.0e-51 207.2 174 61.5
HanXRQChr02g0048101 Helianthus annuus HOM05D007177 ORTHO05D008984 1.4e-51 206.8 168 61.9
CsaV3_2G031600 Cucumis sativus L. HOM05D007177 ORTHO05D008984 3.0e-51 205.7 175 61.1
Cfa013211 Carpinus fangiana HOM05D007177 ORTHO05D008984 4.0e-51 205.3 158 68.4
MD15G1115400 Malus domestica HOM05D007177 ORTHO05D008984 4.0e-51 205.3 176 60.8
Psat5g027720 Pisum sativum HOM05D007177 ORTHO05D008984 8.8e-51 204.1 176 58.5
CDE01G0003 Ceratophyllum demersum HOM05D007177 ORTHO05D008984 4.8e-49 198.4 174 57.5
Glyma.04G072300 Glycine max HOM05D007177 ORTHO05D008984 1.4e-48 196.8 176 57.4
Rhsim02G0187100 Rhododendron simsii HOM05D007177 ORTHO05D008984 2.4e-48 196.1 170 60.0
Glyma.06G073600 Glycine max HOM05D007177 ORTHO05D008984 4.1e-48 195.3 176 56.8
SalBow4G1425 Salvia bowleyana HOM05D007177 ORTHO05D008984 9.1e-48 194.1 172 59.9
arahy.Tifrunner.gnm1.ann1.22L7FB Arachis hypogaea HOM05D007177 ORTHO05D008984 5.9e-47 191.4 156 62.2
Phvul.009G098000 Phaseolus vulgaris HOM05D007177 ORTHO05D008984 5.9e-47 191.4 176 57.4
VMungo1309G2383 Vigna mungo HOM05D007177 ORTHO05D008984 7.7e-47 191.0 176 56.8
Prupe.1G466600 Prunus persica HOM05D007177 ORTHO05D008984 1.0e-46 190.7 162 63.0
HPP92_021881 Vanilla planifolia HOM05D007177 ORTHO05D008984 1.3e-46 190.3 175 58.3
Ca_15697_v3 Cicer arietinum L. HOM05D007177 ORTHO05D008984 1.5e-45 186.8 167 59.3
Haze_21624 Corylus avellana HOM05D007177 ORTHO05D008984 8.9e-43 177.6 141 66.0
FAN15G3007 Fragaria x ananassa HOM05D007177 ORTHO05D008984 3.4e-42 175.6 176 55.7
FAN20G1087 Fragaria x ananassa HOM05D007177 ORTHO05D008984 3.4e-42 175.6 176 55.7
SGA_v2.0_scaffold27G11496 Striga asiatica HOM05D007177 ORTHO05D008984 2.5e-37 159.5 176 54.5
ClCG08G012880 Citrullus lanatus HOM05D007177 ORTHO05D008984 4.3e-37 158.7 140 60.7
Pp3c27_2770 Physcomitrium patens HOM05D007177 ORTHO05D008984 2.3e-35 152.9 175 49.7
COL.COLO4_24067 Corchorus olitorius HOM05D007177 ORTHO05D008984 5.2e-35 151.8 172 52.3
Mapoly0103s0019 Marchantia polymorpha HOM05D007177 ORTHO05D008984 3.2e-32 142.5 194 41.8
AUR62011224 Chenopodium quinoa HOM05D007177 ORTHO05D008984 7.0e-32 141.4 135 59.3
EL10Ac2g02536 Beta vulgaris HOM05D007177 ORTHO05D008984 2.3e-27 126.3 222 40.5
SEGI_07055 Sequoiadendron giganteum HOM05D007177 ORTHO05D008984 4.1e-24 115.5 149 45.0
Gohir.D06G048101 Gossypium hirsutum HOM05D007177 ORTHO05D008984 7.0e-24 114.8 66 78.8
Hma1.2p1_0175F.1_g077230 Hydrangea macrophylla HOM05D007177 ORTHO05D008984 1.8e-19 100.1 62 74.2
Cre07.g328200 Chlamydomonas reinhardtii HOM05D007177 ORTHO05D008984 2.7e-15 86.3 181 33.7
MCO07G393 Micromonas commoda HOM05D007177 ORTHO05D008984 3.8e-09 65.9 172 27.9
AagrBONN_evm.TU.Sc2ySwM_117.3794 Anthoceros agrestis HOM05D007177 ORTHO05D008984 1.2e-07 60.8 94 39.4


User provided reference genes

Program Settings