Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004490 Simmondsia chinensis HOM05D006584 ORTHO05D007640 2.1e-149 532.3 262 100.0
Hund19462 Selenicereus undatus HOM05D006584 ORTHO05D007640 2.2e-127 459.1 254 85.4
Rhsim11G0044500 Rhododendron simsii HOM05D006584 ORTHO05D007640 4.0e-121 438.3 268 78.7
Cc08_g10530 Coffea canephora HOM05D006584 ORTHO05D007640 2.6e-120 435.6 259 80.3
GSVIVG01035364001 Vitis vinifera HOM05D006584 ORTHO05D007640 1.3e-119 433.3 269 77.7
Dinv27980 Davidia involucrata HOM05D006584 ORTHO05D007640 2.9e-119 432.2 253 80.6
QL02p001321 Quercus lobata HOM05D006584 ORTHO05D007640 2.4e-118 429.1 259 78.4
arahy.Tifrunner.gnm1.ann1.U8SEXI Arachis hypogaea HOM05D006584 ORTHO05D007640 3.2e-118 428.7 254 81.1
Hma1.2p1_0482F.1_g162540 Hydrangea macrophylla HOM05D006584 ORTHO05D007640 4.2e-118 428.3 259 78.4
arahy.Tifrunner.gnm1.ann1.3J87F1 Arachis hypogaea HOM05D006584 ORTHO05D007640 5.4e-118 427.9 254 81.1
Actinidia01191 Actinidia chinensis HOM05D006584 ORTHO05D007640 1.2e-117 426.8 251 80.1
vmacro00145 Vaccinium macrocarpon HOM05D006584 ORTHO05D007640 1.2e-117 426.8 268 76.5
Phvul.001G034500 Phaseolus vulgaris HOM05D006584 ORTHO05D007640 2.7e-117 425.6 260 78.8
Medtr1g016440 Medicago truncatula HOM05D006584 ORTHO05D007640 4.6e-117 424.9 260 78.5
Potri.006G230300 Populus trichocarpa HOM05D006584 ORTHO05D007640 4.6e-117 424.9 254 78.7
PGR031G2613 Punica granatum HOM05D006584 ORTHO05D007640 6.0e-117 424.5 252 80.2
PGSC0003DMG400029944 Solanum tuberosum HOM05D006584 ORTHO05D007640 6.0e-117 424.5 260 78.5
Manes.03G047600 Manihot esculenta HOM05D006584 ORTHO05D007640 7.9e-117 424.1 259 79.5
Cfa017949 Carpinus fangiana HOM05D006584 ORTHO05D007640 1.0e-116 423.7 259 77.2
Lj5g0009338 Lotus japonicus HOM05D006584 ORTHO05D007640 1.0e-116 423.7 258 79.1
Solyc08g065350.4 Solanum lycopersicum HOM05D006584 ORTHO05D007640 1.3e-116 423.3 262 77.9
CSS0009868 Camellia sinensis var. sinensis HOM05D006584 ORTHO05D007640 1.8e-116 422.9 259 78.4
CSS0020610 Camellia sinensis var. sinensis HOM05D006584 ORTHO05D007640 1.8e-116 422.9 259 78.4
MSTRG.11661 Avicennia marina HOM05D006584 ORTHO05D007640 3.9e-116 421.8 260 77.3
CiPaw.15G039500 Carya illinoinensis HOM05D006584 ORTHO05D007640 3.9e-116 421.8 262 78.6
Eucgr.C00641 Eucalyptus grandis HOM05D006584 ORTHO05D007640 3.9e-116 421.8 259 78.4
Sopen08g018910 Solanum pennellii HOM05D006584 ORTHO05D007640 3.9e-116 421.8 248 80.2
Ca_13172_v3 Cicer arietinum L. HOM05D006584 ORTHO05D007640 5.1e-116 421.4 260 77.3
Ca_14355_v3 Cicer arietinum L. HOM05D000495 ORTHO05D007640 5.1e-116 421.4 260 77.3
CAN.G181.69 Capsicum annuum HOM05D006584 ORTHO05D007640 6.7e-116 421.0 262 77.1
Peaxi162Scf00477g00010 Petunia axillaris HOM05D006584 ORTHO05D007640 1.1e-115 420.2 260 78.1
Glyma.17G229600 Glycine max HOM05D006584 ORTHO05D007640 1.9e-115 419.5 254 79.1
FAN20G0896 Fragaria x ananassa HOM05D006584 ORTHO05D007640 3.3e-115 418.7 260 77.3
VMungo0647G2476 Vigna mungo HOM05D006584 ORTHO05D007640 3.3e-115 418.7 260 76.9
FvH4_2g32010 Fragaria vesca HOM05D006584 ORTHO05D007640 5.6e-115 417.9 260 77.3
Sabra06G0178400 Salix brachista HOM05D006584 ORTHO05D007640 5.6e-115 417.9 259 77.2
Nitab4.5_0001584g0100 Nicotiana tabacum HOM05D006584 ORTHO05D007640 7.4e-115 417.5 261 77.0
TPR.G13096 Trifolium pratense HOM05D006584 ORTHO05D007640 7.4e-115 417.5 260 76.9
Aqoxy7G01236 Aquilegia oxysepala HOM05D006584 ORTHO05D007640 6.2e-114 414.5 258 75.6
RcHm_v2.0_Chr6g0310741 Rosa chinensis HOM05D006584 ORTHO05D007640 6.2e-114 414.5 260 76.5
Atru.chr7.1052 Acer truncatum HOM05D006584 ORTHO05D007640 8.1e-114 414.1 251 77.7
Thecc.09G053100 Theobroma cacao HOM05D006584 ORTHO05D007640 8.1e-114 414.1 253 77.9
Psat6g020800 Pisum sativum HOM05D006584 ORTHO05D007640 1.1e-113 413.7 260 76.5
HanXRQChr17g0538441 Helianthus annuus HOM05D006584 ORTHO05D007640 1.4e-113 413.3 273 72.9
SGA_v2.0_scaffold88G27225 Striga asiatica HOM05D006584 ORTHO05D007640 1.8e-113 412.9 258 76.0
PSO832G1739 Papaver somniferum HOM05D006584 ORTHO05D007640 2.4e-113 412.5 259 75.7
Lalb_Chr14g0367721 Lupinus albus HOM05D006584 ORTHO05D007640 3.1e-113 412.1 249 79.9
Sed0000821 Sechium edule HOM05D006584 ORTHO05D007640 4.0e-113 411.8 262 74.0
CARHR187290 Cardamine hirsuta HOM05D006584 ORTHO05D007640 5.3e-113 411.4 251 78.1
Os06g0571100 Oryza sativa ssp. japonica HOM05D006584 ORTHO05D007640 1.5e-112 409.8 262 75.2
Migut.A00139 Erythranthe guttata HOM05D006584 ORTHO05D007640 2.6e-112 409.1 246 77.2
MD08G1043300 Malus domestica HOM05D006584 ORTHO05D007640 2.6e-112 409.1 260 74.6
THA.LOC104811245 Tarenaya hassleriana HOM05D006584 ORTHO05D007640 2.6e-112 409.1 275 73.5
Ciclev10008784m.g Citrus clementina HOM05D006584 ORTHO05D007640 3.4e-112 408.7 259 74.1
DCAR_004431 Daucus carota HOM05D006584 ORTHO05D007640 5.8e-112 407.9 259 74.5
Prupe.1G413100 Prunus persica HOM05D006584 ORTHO05D007640 5.8e-112 407.9 246 78.9
AT5G26040 Arabidopsis thaliana HOM05D006584 ORTHO05D007640 1.3e-111 406.8 249 77.9
COL.COLO4_21049 Corchorus olitorius HOM05D006584 ORTHO05D007640 1.3e-111 406.8 250 77.6
AL6G38030 Arabidopsis lyrata HOM05D006584 ORTHO05D007640 1.7e-111 406.4 249 77.5
ClCG05G017800 Citrullus lanatus HOM05D006584 ORTHO05D007640 1.7e-111 406.4 259 74.1
Aa31LG11G5020 Aethionema arabicum HOM05D006584 ORTHO05D007640 6.4e-111 404.4 249 76.7
CsaV3_4G035570 Cucumis sativus L. HOM05D006584 ORTHO05D007640 6.4e-111 404.4 259 73.0
CANSAT25G1083 Cannabis sativa HOM05D006584 ORTHO05D007640 1.9e-110 402.9 259 75.3
A06p36540 Brassica napus HOM05D006584 ORTHO05D007640 2.5e-110 402.5 249 77.1
BraA06t26580Z Brassica rapa HOM05D006584 ORTHO05D007640 2.5e-110 402.5 249 77.1
BolC7t44725H Brassica oleracea HOM05D006584 ORTHO05D007640 4.2e-110 401.7 249 77.1
Carub.0006s2380 Capsella rubella HOM05D006584 ORTHO05D007640 5.5e-110 401.4 249 76.3
SalBow4G2021 Salvia bowleyana HOM05D006584 ORTHO05D007640 9.3e-110 400.6 275 72.0
Gohir.A13G187100 Gossypium hirsutum HOM05D006584 ORTHO05D007640 1.2e-109 400.2 259 73.4
PSO782G5661 Papaver somniferum HOM05D006584 ORTHO05D007640 1.2e-109 400.2 259 72.6
Gorai.013G220000 Gossypium raimondii HOM05D006584 ORTHO05D007640 1.6e-109 399.8 259 74.1
C07p41940 Brassica napus HOM05D006584 ORTHO05D007640 2.7e-109 399.1 249 76.7
Lsat_1_v5_gn_3_24361 Lactuca sativa HOM05D006584 ORTHO05D007640 4.6e-109 398.3 260 73.8
CDE05G0889 Ceratophyllum demersum HOM05D006584 ORTHO05D007640 1.0e-108 397.1 264 71.2
Gohir.D13G193900 Gossypium hirsutum HOM05D006584 ORTHO05D007640 1.0e-108 397.1 259 73.7
Duzib150G0622 Durio zibethinus HOM05D006584 ORTHO05D007640 1.3e-108 396.7 251 74.1
Sp2g21680 Schrenkiella parvula HOM05D006584 ORTHO05D007640 1.9e-107 392.9 249 74.7
PSO063G1048 Papaver somniferum HOM05D006584 ORTHO05D007640 5.6e-107 391.3 251 75.7
Thhalv10004371m.g Eutrema salsugineum HOM05D006584 ORTHO05D007640 1.6e-106 389.8 249 74.7
Nitab4.5_0004456g0010 Nicotiana tabacum HOM05D006584 ORTHO05D007640 3.2e-102 375.6 249 73.9
EL10Ac2g03896 Beta vulgaris HOM05D006584 ORTHO05D007640 3.3e-99 365.5 260 70.4
AUR62009158 Chenopodium quinoa HOM05D006584 ORTHO05D007640 1.8e-97 359.8 254 69.7
AUR62009159 Chenopodium quinoa HOM05D006584 ORTHO05D007640 1.8e-97 359.8 254 68.1
SMO228G0123 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 4.2e-94 348.6 262 63.4
unitig_748.g7524 Utricularia gibba HOM05D006584 ORTHO05D007640 6.1e-93 344.7 249 68.3
Duzib168G0725 Durio zibethinus HOM05D006584 ORTHO05D007640 3.9e-92 342.0 259 66.0
Lj8A547G7 Lonicera japonica HOM05D006584 ORTHO05D007640 2.0e-91 339.7 263 66.2
Pp3c16_3940 Physcomitrium patens HOM05D006584 ORTHO05D007640 9.7e-91 337.4 260 63.1
MELO3C016865.2 Cucumis melo HOM05D006584 ORTHO05D007640 8.2e-90 334.3 263 63.5
Mapoly0007s0200 Marchantia polymorpha HOM05D006584 ORTHO05D007640 1.3e-87 327.0 249 61.0
FAN15G2290 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.7e-87 326.6 243 67.5
Pp3c6_24640 Physcomitrium patens HOM05D006584 ORTHO05D007640 1.7e-87 326.6 246 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1186 Anthoceros agrestis HOM05D006584 ORTHO05D007640 3.0e-84 315.8 250 58.8
HPP92_026784 Vanilla planifolia HOM05D006584 ORTHO05D007640 6.7e-84 314.7 201 76.1
CBR_g50289 Chara braunii HOM05D006584 ORTHO05D007640 6.3e-82 308.1 230 63.5
Cpa.g.sc7.166 Carica papaya HOM05D006584 ORTHO05D007640 2.9e-71 272.7 151 82.8
Hma1.2p1_0482F.1_g162550 Hydrangea macrophylla HOM05D006584 ORTHO05D007640 1.1e-70 270.8 150 83.3
SEGI_11187 Sequoiadendron giganteum HOM05D006584 ORTHO05D007640 4.2e-70 268.9 188 68.1
FAN27G2179 Fragaria x ananassa HOM05D006584 ORTHO05D007640 2.8e-66 256.1 235 58.7
MBI01_g09962_MAGBIO Magnolia biondii HOM05D006584 ORTHO05D007640 7.0e-65 251.5 180 68.3
AUR62022066 Chenopodium quinoa HOM05D006584 ORTHO05D007640 8.0e-61 238.0 254 50.8
Haze_18198 Corylus avellana HOM05D006584 ORTHO05D007640 7.5e-59 231.5 304 47.4
AUR62022067 Chenopodium quinoa HOM05D006584 ORTHO05D007640 2.4e-57 226.5 170 66.5
Lj8A542T15 Lonicera japonica HOM05D006584 ORTHO05D007640 3.8e-55 219.2 136 76.5
Zm00001eb385130 Zea mays HOM05D006584 ORTHO05D007640 1.3e-42 177.6 136 61.0
Cre03.g158200 Chlamydomonas reinhardtii HOM05D006584 ORTHO05D007640 4.1e-41 172.6 291 36.4
ATR0716G011 Amborella trichopoda HOM05D006584 ORTHO05D007640 1.2e-37 161.0 101 72.3
arahy.Tifrunner.gnm1.ann1.GYHR0X Arachis hypogaea HOM05D001150 ORTHO05D007640 7.8e-32 141.7 71 88.7
Oeu029409.1 Olea europaea HOM05D006584 ORTHO05D007640 1.1e-28 131.3 83 74.7
RcHm_v2.0_Chr4g0398391 Rosa chinensis HOM05D006584 ORTHO05D007640 1.1e-22 111.3 191 37.7
RcHm_v2.0_Chr5g0028711 Rosa chinensis HOM05D006584 ORTHO05D007640 2.1e-16 90.5 139 41.7
Cre08.g358555 Chlamydomonas reinhardtii HOM05D006584 ORTHO05D007640 6.6e-15 85.5 206 30.1
MCO13G209 Micromonas commoda HOM05D001141 ORTHO05D007640 2.5e-14 83.6 209 27.8
Cre14.g632300 Chlamydomonas reinhardtii HOM05D001141 ORTHO05D007640 7.3e-14 82.0 227 25.6
Pp3c14_22810 Physcomitrium patens HOM05D001141 ORTHO05D007640 1.4e-12 77.8 213 29.1
PRCOL_00005844 Prasinoderma coloniale HOM05D006584 ORTHO05D007640 5.3e-12 75.9 108 38.9
AagrBONN_evm.TU.Sc2ySwM_117.1814 Anthoceros agrestis HOM05D001141 ORTHO05D007640 6.9e-12 75.5 136 34.6
Mapoly0004s0154 Marchantia polymorpha HOM05D001141 ORTHO05D007640 2.6e-11 73.6 186 30.1
PRCOL_00003492 Prasinoderma coloniale HOM05D001141 ORTHO05D007640 7.6e-11 72.0 222 25.7
RcHm_v2.0_Chr6g0269981 Rosa chinensis HOM05D006584 ORTHO05D007640 6.4e-10 68.9 45 64.4
RcHm_v2.0_Chr6g0269961 Rosa chinensis HOM05D006584 ORTHO05D007640 4.2e-09 66.2 61 63.9
MCO15G556 Micromonas commoda HOM05D001141 ORTHO05D007640 9.3e-09 65.1 188 28.2
Migut.I00311 Erythranthe guttata HOM05D001053 ORTHO05D004820 1.7e-07 60.8 186 23.1
Zm00001eb300710 Zea mays HOM05D001053 ORTHO05D007087 5.1e-07 59.3 197 24.9
Medtr4g109500 Medicago truncatula HOM05D001053 ORTHO05D004820 4.3e-06 56.2 182 23.1
ATR0820G066 Amborella trichopoda HOM05D001141 ORTHO05D001088 7.3e-06 55.5 199 27.6
Os11g0200000 Oryza sativa ssp. japonica HOM05D001141 ORTHO05D293696 7.3e-06 55.5 91 38.5
Os12g0182700 Oryza sativa ssp. japonica HOM05D001053 ORTHO05D008021 9.6e-06 55.1 155 27.7
RcHm_v2.0_Chr5g0034671 Rosa chinensis HOM05D006584 ORTHO05D007640 9.6e-06 55.1 38 63.2


User provided reference genes

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