Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 4.4e-213 744.6 435 100.0
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 8.9e-73 278.5 419 44.9
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.2e-72 278.1 411 45.5
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 5.9e-69 265.8 412 44.9
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.1e-67 261.5 409 43.3
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 4.3e-67 259.6 419 42.5
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 7.3e-67 258.8 411 42.3
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.6e-66 257.7 411 42.1
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 8.0e-66 255.4 438 42.0
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 3.1e-65 253.4 419 42.2
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 2.0e-64 250.8 414 41.8
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 3.4e-64 250.0 427 41.7
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 4.4e-64 249.6 410 42.7
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.2e-63 247.3 390 42.1
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 3.7e-63 246.5 393 42.0
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.4e-62 244.6 424 42.0
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.2e-61 241.5 410 42.4
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.0e-60 236.9 411 39.9
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.5e-59 234.6 411 38.7
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 5.6e-59 232.6 407 43.5
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 7.3e-59 232.3 380 40.8
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.1e-57 228.4 410 40.5
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 1.1e-57 228.4 413 40.4
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.8e-57 227.6 479 38.0
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 1.8e-57 227.6 407 41.8
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.5e-56 224.6 428 38.6
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.6e-56 223.8 399 40.1
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 4.4e-56 223.0 473 36.6
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 9.8e-56 221.9 475 38.7
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 9.8e-56 221.9 479 38.2
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-55 221.5 475 38.5
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.2e-55 220.7 409 40.8
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.4e-55 219.2 479 37.8
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 4.1e-54 216.5 415 38.3
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 1.6e-53 214.5 414 38.9
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.7e-53 213.8 411 38.0
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.3e-52 211.5 416 37.3
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.3e-52 210.7 333 43.2
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 3.0e-52 210.3 402 38.8
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 3.3e-51 206.8 425 39.3
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.6e-50 204.5 417 35.7
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 9.9e-48 195.3 407 36.6
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 8.4e-47 192.2 314 40.8
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 2.4e-46 190.7 429 35.4
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 3.2e-46 190.3 374 38.2
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 3.2e-46 190.3 412 38.3
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 9.2e-46 188.7 299 43.5
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 9.2e-46 188.7 334 39.5
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 9.2e-46 188.7 273 46.9
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.6e-45 188.0 421 35.4
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 8.6e-44 182.2 270 42.2
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 2.5e-43 180.6 416 34.9
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 2.1e-42 177.6 408 31.9
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.1e-42 177.6 439 34.9
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 6.2e-42 176.0 368 36.7
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 4.0e-41 173.3 443 33.4
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 5.2e-41 172.9 418 34.2
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 6.8e-41 172.6 375 35.2
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 6.8e-41 172.6 416 32.7
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 4.4e-40 169.9 461 32.8
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.3e-39 168.3 283 39.9
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.1e-38 165.2 381 33.3
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.4e-38 164.9 412 34.7
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 1.9e-38 164.5 442 31.9
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.9e-38 164.5 357 37.3
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.4e-38 164.1 337 39.2
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 2.4e-38 164.1 431 33.6
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 4.2e-38 163.3 428 30.8
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 4.2e-38 163.3 418 34.0
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.7e-37 160.6 267 41.2
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.7e-37 160.6 435 34.7
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 4.6e-37 159.8 459 30.9
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 4.6e-37 159.8 387 34.6
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 7.8e-37 159.1 452 29.6
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.0e-36 158.7 454 29.5
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-35 154.5 222 47.7
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.3e-35 153.7 405 33.8
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 5.6e-35 152.9 252 40.1
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 7.3e-35 152.5 465 30.5
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.3e-34 151.8 417 30.5
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.3e-34 151.8 426 31.5
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 4.8e-34 149.8 395 33.2
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 4.0e-33 146.7 461 29.9
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-32 145.2 291 36.8
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 1.5e-32 144.8 264 35.6
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 2.9e-31 140.6 467 29.3
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 6.4e-31 139.4 350 31.1
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 8.4e-31 139.0 445 33.0
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 3.2e-30 137.1 404 29.7
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 4.2e-30 136.7 328 37.2
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.6e-29 134.8 471 27.4
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 3.5e-29 133.7 425 28.5
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 4.6e-29 133.3 147 57.8
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 6.0e-29 132.9 330 30.0
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 7.9e-29 132.5 469 27.5
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.9e-27 127.9 425 30.1
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 5.6e-27 126.3 440 26.8
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 7.3e-27 125.9 433 30.5
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.3e-26 125.2 429 29.4
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 2.1e-26 124.4 400 30.5
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 3.6e-26 123.6 443 27.1
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 8.1e-26 122.5 469 33.3
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 6.9e-25 119.4 467 29.8
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.2e-24 118.6 325 30.2
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.3e-23 115.2 434 28.1
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 2.2e-23 114.4 277 35.4
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.5e-22 109.8 138 50.7
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 9.3e-22 109.0 262 34.0
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.9e-19 101.3 350 26.6
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 4.3e-19 100.1 145 44.8
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 4.8e-18 96.7 83 69.9
Hund16647 Selenicereus undatus HOM05D005648 ORTHO05D007357 5.8e-16 89.7 125 45.6
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 7.6e-16 89.4 90 58.9
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.3e-15 88.6 218 32.1
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.6e-13 81.6 321 28.3
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 2.1e-13 81.3 422 25.4
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.7e-12 76.3 244 28.3
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.9e-11 74.7 83 61.4
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.3e-11 73.9 106 46.2
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 5.7e-11 73.2 82 57.3
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 2.8e-10 70.9 310 26.1
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 4.8e-10 70.1 346 26.0
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.0e-08 64.7 116 33.6
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.3e-07 62.0 115 40.0
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 3.8e-07 60.5 93 35.5
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 8.4e-07 59.3 136 38.2
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 1.1e-06 58.9 62 58.1
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 5.5e-06 56.6 61 47.5


User provided reference genes

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